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The map label for this gene is phyR [H]

Identifier: 209550602

GI number: 209550602

Start: 3084237

End: 3085031

Strand: Direct

Name: phyR [H]

Synonym: Rleg2_3026

Alternate gene names: 209550602

Gene position: 3084237-3085031 (Clockwise)

Preceding gene: 209550599

Following gene: 209550603

Centisome position: 67.97

GC content: 57.86

Gene sequence:

>795_bases
ATGACACTTTCCACTCGAATTGCGCCGCACCTTCCTTATCTGCGCCGCTATTCCCGCGCCCTTACCGGCACTCAGACTTC
AGGCGACGCTTATGTCGCCGCCGTTCTCGAAGCTATCATCGCCGATCTCACCATTTTCCCGGATACGGCGAATGACCGGG
TGGCACTCTACAAACTGTTTACACAATTGTTTGGTTCCACCGCCGTCCAGATTCCAGAGCCGACCTCACCCTATGCCTGG
GAACAGCGCGCCACACTGAACCTTTCGAAGGTTTCGCCGGGTGCCCGACAGGCCTTCCTGCTTGCCTCCGTAGAGAATTT
CCGGGTCGCCGAAATCGGAGAAATCCTGGAACTCGACGAACAGGATGTCATGCGTCTGCTCGACATGGCGTCGCAGGAGA
TTTCACGTCAGGTCGCCACCGATATCATGATCATCGAGGACGAACCGCTGATCGCCATGGATATCGAGCAAATGGTCGAA
AGCCTCGGCCATCGCGTCACCGGCATTGCCCGCACCCATGCCGAGGCGGTGGCTCTCTACAACAAGACCAAGCCGAGCAT
GGTGCTGGCCGACATCCAGCTGGCCGACGGCAGCTCCGGCATCGACGCCGTCAACGACATTCTCAAGACGTCGAGCGTGC
CGGTGATCTTCATTACCGCCTTCCCGGAAAGGCTTCTGACCGGTGAGCGCCCGGAACCGACTTTCCTTGTTACCAAGCCG
TTCAACCCAGACATGGTCAAGGCATTGATCAGCCAAGCTCTTTTCTTCAACGAATCGACCAGAGTGGCCGCCTGA

Upstream 100 bases:

>100_bases
GGCGCGACAAAAAAAGTTCCTGCCGTTCCGGAACTTTTTTATCAAGGCGACGTTAACCGCTCATTGGAGCCAATGACCGG
CCTGCATACGGGAGCACTTA

Downstream 100 bases:

>100_bases
GACGCAATTTTCCGGCCTTCGGAACCAAATCGCCAAAGCAGACGTTCCGGTGCTACCGGGACGCTCCGCTGCTTTAACGG
TTTCTGCAGCGCTTTGTTCT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTLSTRIAPHLPYLRRYSRALTGTQTSGDAYVAAVLEAIIADLTIFPDTANDRVALYKLFTQLFGSTAVQIPEPTSPYAW
EQRATLNLSKVSPGARQAFLLASVENFRVAEIGEILELDEQDVMRLLDMASQEISRQVATDIMIIEDEPLIAMDIEQMVE
SLGHRVTGIARTHAEAVALYNKTKPSMVLADIQLADGSSGIDAVNDILKTSSVPVIFITAFPERLLTGERPEPTFLVTKP
FNPDMVKALISQALFFNESTRVAA

Sequences:

>Translated_264_residues
MTLSTRIAPHLPYLRRYSRALTGTQTSGDAYVAAVLEAIIADLTIFPDTANDRVALYKLFTQLFGSTAVQIPEPTSPYAW
EQRATLNLSKVSPGARQAFLLASVENFRVAEIGEILELDEQDVMRLLDMASQEISRQVATDIMIIEDEPLIAMDIEQMVE
SLGHRVTGIARTHAEAVALYNKTKPSMVLADIQLADGSSGIDAVNDILKTSSVPVIFITAFPERLLTGERPEPTFLVTKP
FNPDMVKALISQALFFNESTRVAA
>Mature_263_residues
TLSTRIAPHLPYLRRYSRALTGTQTSGDAYVAAVLEAIIADLTIFPDTANDRVALYKLFTQLFGSTAVQIPEPTSPYAWE
QRATLNLSKVSPGARQAFLLASVENFRVAEIGEILELDEQDVMRLLDMASQEISRQVATDIMIIEDEPLIAMDIEQMVES
LGHRVTGIARTHAEAVALYNKTKPSMVLADIQLADGSSGIDAVNDILKTSSVPVIFITAFPERLLTGERPEPTFLVTKPF
NPDMVKALISQALFFNESTRVAA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28999; Mature: 28867

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSTRIAPHLPYLRRYSRALTGTQTSGDAYVAAVLEAIIADLTIFPDTANDRVALYKLF
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
TQLFGSTAVQIPEPTSPYAWEQRATLNLSKVSPGARQAFLLASVENFRVAEIGEILELDE
HHHHCCCEEECCCCCCCCCCCCCCEEEHHHCCCCHHHEEEEEHHCCCCHHHHHHHHCCCH
QDVMRLLDMASQEISRQVATDIMIIEDEPLIAMDIEQMVESLGHRVTGIARTHAEAVALY
HHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
NKTKPSMVLADIQLADGSSGIDAVNDILKTSSVPVIFITAFPERLLTGERPEPTFLVTKP
CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCCCCEEEECC
FNPDMVKALISQALFFNESTRVAA
CCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TLSTRIAPHLPYLRRYSRALTGTQTSGDAYVAAVLEAIIADLTIFPDTANDRVALYKLF
CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
TQLFGSTAVQIPEPTSPYAWEQRATLNLSKVSPGARQAFLLASVENFRVAEIGEILELDE
HHHHCCCEEECCCCCCCCCCCCCCEEEHHHCCCCHHHEEEEEHHCCCCHHHHHHHHCCCH
QDVMRLLDMASQEISRQVATDIMIIEDEPLIAMDIEQMVESLGHRVTGIARTHAEAVALY
HHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
NKTKPSMVLADIQLADGSSGIDAVNDILKTSSVPVIFITAFPERLLTGERPEPTFLVTKP
CCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCCCCEEEECC
FNPDMVKALISQALFFNESTRVAA
CCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA