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The map label for this gene is 209550381

Identifier: 209550381

GI number: 209550381

Start: 2846633

End: 2847142

Strand: Direct

Name: 209550381

Synonym: Rleg2_2802

Alternate gene names: NA

Gene position: 2846633-2847142 (Clockwise)

Preceding gene: 209550380

Following gene: 209550382

Centisome position: 62.73

GC content: 65.49

Gene sequence:

>510_bases
ATGCGTCAACCCGCAACGACCATCGATCTCCGGCGTGATCTCGTCGGCCTTCTGCCCCGCCTTCGCCGCTTCGCGATCAC
GCTCGCGGGTGAGGCCGCCGTGGCCGACGAACTCGTCCAGGCGGTCTGTCAACGCGCCATCGCCAAGGGCCATCAATGGA
GTGGTGAAGGCCGCCTGGAAAGCTGGATTTACACGCTCGCCCGCCAGCAATGGACCGACGACAGCCGCAAGCGCAAGCCA
AAGGCGTCCGTCCGCGGCAACGTCACGGATATTCGCGACGCCGCGCGCGAGCGCTCGGCTGCAGTCGATCCCGACGCCAT
TCATCGCATGATCGCCGATATGCCGGACGGCCTTTGCAGCATGTTCCTGCTCGTCGACGTCGAAGGCCACAGCTACCAGC
AGGCGGCCGACATCATGGGCACGCCGGTGGCAAATGTCGTCTCGCAGCTCGCGACCGCAAGGCTGCATTTTGCCGGGCTT
GCCGGCACCCACCCGATCCACAGGTACTGA

Upstream 100 bases:

>100_bases
CTTGCTTCATAAAGCACATGCGGCGTCGATAAGGCCGGCTTCGCGCCCGACGGCGAACCCTTCGTCCGCGAAACCATTGT
GAATGCTTCTTGGATAGACA

Downstream 100 bases:

>100_bases
ATTGCTCGATCTTAGGAAATTGCCGCTCGAAGCCCAGCTTACCGCCCTTCTCGATGGCGAGGTCTCGCCCGAACAGCGCC
ACGAACTGGAGCAGCGCCTG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Protein; Sigma-; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor RpoE; ECF Sigma Factor PrtI; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Sigma Factor; ECF Family Sigma Factor; ECF-Type Sigma Factor; RpoE6 RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Family Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor SigU; RNA Polymerase ECF Sigma Factor; ECF Family RNA Polymerase Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit PrtI; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRQPATTIDLRRDLVGLLPRLRRFAITLAGEAAVADELVQAVCQRAIAKGHQWSGEGRLESWIYTLARQQWTDDSRKRKP
KASVRGNVTDIRDAARERSAAVDPDAIHRMIADMPDGLCSMFLLVDVEGHSYQQAADIMGTPVANVVSQLATARLHFAGL
AGTHPIHRY

Sequences:

>Translated_169_residues
MRQPATTIDLRRDLVGLLPRLRRFAITLAGEAAVADELVQAVCQRAIAKGHQWSGEGRLESWIYTLARQQWTDDSRKRKP
KASVRGNVTDIRDAARERSAAVDPDAIHRMIADMPDGLCSMFLLVDVEGHSYQQAADIMGTPVANVVSQLATARLHFAGL
AGTHPIHRY
>Mature_169_residues
MRQPATTIDLRRDLVGLLPRLRRFAITLAGEAAVADELVQAVCQRAIAKGHQWSGEGRLESWIYTLARQQWTDDSRKRKP
KASVRGNVTDIRDAARERSAAVDPDAIHRMIADMPDGLCSMFLLVDVEGHSYQQAADIMGTPVANVVSQLATARLHFAGL
AGTHPIHRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18695; Mature: 18695

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPATTIDLRRDLVGLLPRLRRFAITLAGEAAVADELVQAVCQRAIAKGHQWSGEGRLE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SWIYTLARQQWTDDSRKRKPKASVRGNVTDIRDAARERSAAVDPDAIHRMIADMPDGLCS
HHHHHHHHHHCCCHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHH
MFLLVDVEGHSYQQAADIMGTPVANVVSQLATARLHFAGLAGTHPIHRY
HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRQPATTIDLRRDLVGLLPRLRRFAITLAGEAAVADELVQAVCQRAIAKGHQWSGEGRLE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
SWIYTLARQQWTDDSRKRKPKASVRGNVTDIRDAARERSAAVDPDAIHRMIADMPDGLCS
HHHHHHHHHHCCCHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHH
MFLLVDVEGHSYQQAADIMGTPVANVVSQLATARLHFAGLAGTHPIHRY
HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA