| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
Click here to switch to the map view.
The map label for this gene is rsbU [H]
Identifier: 209549888
GI number: 209549888
Start: 2358977
End: 2361337
Strand: Direct
Name: rsbU [H]
Synonym: Rleg2_2304
Alternate gene names: 209549888
Gene position: 2358977-2361337 (Clockwise)
Preceding gene: 209549887
Following gene: 209549889
Centisome position: 51.98
GC content: 58.15
Gene sequence:
>2361_bases ATGATGGGGGGGCGATCACTGAAAAGACCGGCAGGCATAGGCTTTCGGGCAAAGTTCATCCTGGTCGTCGGCGGAGCCGT CCTCTTCGACCTGCTGGTCAGCGGCGGGCTGGCGCTTTGGAACGTTCAGAGACTGTCGCGCGACGCAACGCTCGAGGTCG GCCAGGGTCTCGAAGCGGCTAGCCAGGAATACATCCGCACCTATGCTGATTCGACCACAGCACAGGTGAGTTTGCTGCTG CGGCAGGTTCATAGCGACGTCAGTACGCTCGCCGGCGTGCTGCAGGCGCAGATCGACGATCCCGCGCGCAATTCGGACGT CGGCGCGGCGATCGCCCGCACATCTCCCGGCAGCGTCAGCCTTTCCTACGATCCGCAGGGAAAGTGGTCTCAGAACGCTC CCGGATCAGTGTCGGTCGTAAGCGTCTGGGGTTACCTGCTCGGACAAGACCGGCAGCCAAGGCCGGACGTTGAGAGCGAT ATCCGCACGAGCGCGGTTCTGGATCTTGTTGCGCCGAGCCTGCTGCAGCACGGTGCTTCGAAGCTGCAGATGTATTACAT CGGCTCGAAAGAACGGCCGATCTTCAGAACGGCGCCCTATACCGACCAGGCCCAGACCTTCGACCGCCTTTATCCCGGAC ATAACGAGGCCAACTTCTGGGACTTTTTTTTCCCCGGACTTTACGAATCCTGGCAGGGCTGGGCCAAGGATATGAAGACG CGGCCGGTCGCTGATGACATCACCCAGACGGCGCCCTATACAGACGCCATTACCGGCAAGCTGATCGTCAGTTTCTTTCA TCCGCTATGGACAGCCGACAGGCAGGATGTCGCCGGGACGGCTGGCGCGGACATCACACTCGACCAGCTCGCGCAGATTG TTGAGAATGTGAAAGTCGCCCAGTCCGGCTTTGGATTTCTCGCAATGTCCGACGGAAACGTTGTGGCGATCAACAGCACA GGAGAAAAAACGCTCGGTCTGCGTTCTGCGAGCGATGCGAGTGCAGCCGGCGCCTTGACCGGCCTGGAACGCTCCCTCAA GGGAAGCTCCCAGCCTGCCATCGCCAAACTGGCTCTTGACCGAGAACAGGGCATTCAGCACCTGCTGTTGCAGCAGGACG GCAACGACGTCCCCTATATCGCTATCGTCAAGAAACTGCCGGCGACCAATCTCTGGGTCAGTGGCCCGGCTCGGCAAGAG GCGATGTTGCTGGGGGTGGTTGTGCCTGAGCGCGAAATCGATGCCTCGCTCTATGCGGCCCAGGCCAAGATTTCCGAAGC GACGAACCGGATCGTGCTCTACCAAATTCTGGCGATCCTGCTGTCCCTGCTGATCGTGACGATCGCGGTCTTTGCAGCCT CGAAACGAATAACCAGCGGGATCAGTGCTCTGGCAGGTGCCGCCAAACGGATCCAGGCGAAGGATTATTCGGTCAGGGTG GCCATATCGAGCAGGGATGAAGTCGGCGAGGCCGGCGAAGCATTCAATCGCATGGCCGAAGAAATCAGCTATCACACGGA AAATCTTGAGCAGCTCGTCGAAGAGCGAACCGCTCAAATCGAAGATGCAAAAGAAGAGATTTCGACGCTGAACGCGCAGC TGCAGCGAGAAAATAGGCGTCTTGGAACGGAACTCGCCGTCGCCGAGAGAATCCAGTTGATGGTGCTTCCGCTGGATCAG GAGCTCGAGGACTTTCAGGCGCTCGAGATCGCCGCCTATATGAGACCCGCGGAAGAAGTCGGCGGCGATTATTACGACGT CTTGAAGAACGGCAGCCGGCTGAAGATCGGCATCGGCGACGTCACCGGACACGGGCTGGAAAGTGGCGTGTTGATGCTGA TGGTTCAATCCGTCGCCCGCGCACTGCAGGAAGCCGGAAACACCGATGCCGTGGAGTTTCTGACACATCTGAACAGCGCC CTGTTTAAAAATATCGTCAGGACGAAAATCGATAAGCACCTCACCCTGGCGTTTCTTGACTATGACGGAAAAGAGATGAT CCTGTCGGGGCAACACGAGGAAGTTGTCGTCGTCAGGGCAAACGGCGAGGTCGAACGTATAGACACCATGGATCTGGGTA TACCGATCGGACTGGAGGCCGATATATCCGCTTTCATCAAAACCCGCGAAATCGCGTTCGAAAAGGGGGACCTCATACTC TTGCATACGGATGGCGTCACGGAAGCCGAAAACGACGCCGGAGAATTGTTCGGCATGGACCGGCTGTGCTGCGAAGCCGT TCGCCTGAGGAACCTGAGCGCTGAGAAAGTCGTTTCCGAAATCGTGGCGACACTCATGCTCTTTATCGGATCGCAGAAAA TCTACGATGACATCACGCTTCTTGCAGTACGGCATAGGTGA
Upstream 100 bases:
>100_bases GCAGATTCCGGCAAGGGTTCAAGGATCACGTCTTTGCCGCCCTTCACCCCAAAGGTTATGCAGGCTGGCCGATCTGGGCG GCTTCCGGGCGAAAGCCACA
Downstream 100 bases:
>100_bases GAAATGACGCCAACGGTATTTGGCATCGAATCTCTGACCGACATAAGCCTGGATTCGGGCACGCGCCTTACATTGACCGA TGGACCGCTTCAGCTTGGAT
Product: protein serine/threonine phosphatase
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 786; Mature: 786
Protein sequence:
>786_residues MMGGRSLKRPAGIGFRAKFILVVGGAVLFDLLVSGGLALWNVQRLSRDATLEVGQGLEAASQEYIRTYADSTTAQVSLLL RQVHSDVSTLAGVLQAQIDDPARNSDVGAAIARTSPGSVSLSYDPQGKWSQNAPGSVSVVSVWGYLLGQDRQPRPDVESD IRTSAVLDLVAPSLLQHGASKLQMYYIGSKERPIFRTAPYTDQAQTFDRLYPGHNEANFWDFFFPGLYESWQGWAKDMKT RPVADDITQTAPYTDAITGKLIVSFFHPLWTADRQDVAGTAGADITLDQLAQIVENVKVAQSGFGFLAMSDGNVVAINST GEKTLGLRSASDASAAGALTGLERSLKGSSQPAIAKLALDREQGIQHLLLQQDGNDVPYIAIVKKLPATNLWVSGPARQE AMLLGVVVPEREIDASLYAAQAKISEATNRIVLYQILAILLSLLIVTIAVFAASKRITSGISALAGAAKRIQAKDYSVRV AISSRDEVGEAGEAFNRMAEEISYHTENLEQLVEERTAQIEDAKEEISTLNAQLQRENRRLGTELAVAERIQLMVLPLDQ ELEDFQALEIAAYMRPAEEVGGDYYDVLKNGSRLKIGIGDVTGHGLESGVLMLMVQSVARALQEAGNTDAVEFLTHLNSA LFKNIVRTKIDKHLTLAFLDYDGKEMILSGQHEEVVVVRANGEVERIDTMDLGIPIGLEADISAFIKTREIAFEKGDLIL LHTDGVTEAENDAGELFGMDRLCCEAVRLRNLSAEKVVSEIVATLMLFIGSQKIYDDITLLAVRHR
Sequences:
>Translated_786_residues MMGGRSLKRPAGIGFRAKFILVVGGAVLFDLLVSGGLALWNVQRLSRDATLEVGQGLEAASQEYIRTYADSTTAQVSLLL RQVHSDVSTLAGVLQAQIDDPARNSDVGAAIARTSPGSVSLSYDPQGKWSQNAPGSVSVVSVWGYLLGQDRQPRPDVESD IRTSAVLDLVAPSLLQHGASKLQMYYIGSKERPIFRTAPYTDQAQTFDRLYPGHNEANFWDFFFPGLYESWQGWAKDMKT RPVADDITQTAPYTDAITGKLIVSFFHPLWTADRQDVAGTAGADITLDQLAQIVENVKVAQSGFGFLAMSDGNVVAINST GEKTLGLRSASDASAAGALTGLERSLKGSSQPAIAKLALDREQGIQHLLLQQDGNDVPYIAIVKKLPATNLWVSGPARQE AMLLGVVVPEREIDASLYAAQAKISEATNRIVLYQILAILLSLLIVTIAVFAASKRITSGISALAGAAKRIQAKDYSVRV AISSRDEVGEAGEAFNRMAEEISYHTENLEQLVEERTAQIEDAKEEISTLNAQLQRENRRLGTELAVAERIQLMVLPLDQ ELEDFQALEIAAYMRPAEEVGGDYYDVLKNGSRLKIGIGDVTGHGLESGVLMLMVQSVARALQEAGNTDAVEFLTHLNSA LFKNIVRTKIDKHLTLAFLDYDGKEMILSGQHEEVVVVRANGEVERIDTMDLGIPIGLEADISAFIKTREIAFEKGDLIL LHTDGVTEAENDAGELFGMDRLCCEAVRLRNLSAEKVVSEIVATLMLFIGSQKIYDDITLLAVRHR >Mature_786_residues MMGGRSLKRPAGIGFRAKFILVVGGAVLFDLLVSGGLALWNVQRLSRDATLEVGQGLEAASQEYIRTYADSTTAQVSLLL RQVHSDVSTLAGVLQAQIDDPARNSDVGAAIARTSPGSVSLSYDPQGKWSQNAPGSVSVVSVWGYLLGQDRQPRPDVESD IRTSAVLDLVAPSLLQHGASKLQMYYIGSKERPIFRTAPYTDQAQTFDRLYPGHNEANFWDFFFPGLYESWQGWAKDMKT RPVADDITQTAPYTDAITGKLIVSFFHPLWTADRQDVAGTAGADITLDQLAQIVENVKVAQSGFGFLAMSDGNVVAINST GEKTLGLRSASDASAAGALTGLERSLKGSSQPAIAKLALDREQGIQHLLLQQDGNDVPYIAIVKKLPATNLWVSGPARQE AMLLGVVVPEREIDASLYAAQAKISEATNRIVLYQILAILLSLLIVTIAVFAASKRITSGISALAGAAKRIQAKDYSVRV AISSRDEVGEAGEAFNRMAEEISYHTENLEQLVEERTAQIEDAKEEISTLNAQLQRENRRLGTELAVAERIQLMVLPLDQ ELEDFQALEIAAYMRPAEEVGGDYYDVLKNGSRLKIGIGDVTGHGLESGVLMLMVQSVARALQEAGNTDAVEFLTHLNSA LFKNIVRTKIDKHLTLAFLDYDGKEMILSGQHEEVVVVRANGEVERIDTMDLGIPIGLEADISAFIKTREIAFEKGDLIL LHTDGVTEAENDAGELFGMDRLCCEAVRLRNLSAEKVVSEIVATLMLFIGSQKIYDDITLLAVRHR
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 85517; Mature: 85517
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS50885 HAMP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMGGRSLKRPAGIGFRAKFILVVGGAVLFDLLVSGGLALWNVQRLSRDATLEVGQGLEAA CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHCCHHEEEHHHHCCCCHHHHCCCCHHH SQEYIRTYADSTTAQVSLLLRQVHSDVSTLAGVLQAQIDDPARNSDVGAAIARTSPGSVS HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEE LSYDPQGKWSQNAPGSVSVVSVWGYLLGQDRQPRPDVESDIRTSAVLDLVAPSLLQHGAS EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH KLQMYYIGSKERPIFRTAPYTDQAQTFDRLYPGHNEANFWDFFFPGLYESWQGWAKDMKT HEEEEEECCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHCCC RPVADDITQTAPYTDAITGKLIVSFFHPLWTADRQDVAGTAGADITLDQLAQIVENVKVA CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHH QSGFGFLAMSDGNVVAINSTGEKTLGLRSASDASAAGALTGLERSLKGSSQPAIAKLALD HCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHC REQGIQHLLLQQDGNDVPYIAIVKKLPATNLWVSGPARQEAMLLGVVVPEREIDASLYAA HHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCHHHHHHHHHH QAKISEATNRIVLYQILAILLSLLIVTIAVFAASKRITSGISALAGAAKRIQAKDYSVRV HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE AISSRDEVGEAGEAFNRMAEEISYHTENLEQLVEERTAQIEDAKEEISTLNAQLQRENRR EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGTELAVAERIQLMVLPLDQELEDFQALEIAAYMRPAEEVGGDYYDVLKNGSRLKIGIGD HCHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCCCCEEEEEECC VTGHGLESGVLMLMVQSVARALQEAGNTDAVEFLTHLNSALFKNIVRTKIDKHLTLAFLD CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE YDGKEMILSGQHEEVVVVRANGEVERIDTMDLGIPIGLEADISAFIKTREIAFEKGDLIL CCCCEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHEECCCCEEE LHTDGVTEAENDAGELFGMDRLCCEAVRLRNLSAEKVVSEIVATLMLFIGSQKIYDDITL EECCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCEEE LAVRHR EEEECC >Mature Secondary Structure MMGGRSLKRPAGIGFRAKFILVVGGAVLFDLLVSGGLALWNVQRLSRDATLEVGQGLEAA CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHCCHHEEEHHHHCCCCHHHHCCCCHHH SQEYIRTYADSTTAQVSLLLRQVHSDVSTLAGVLQAQIDDPARNSDVGAAIARTSPGSVS HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEE LSYDPQGKWSQNAPGSVSVVSVWGYLLGQDRQPRPDVESDIRTSAVLDLVAPSLLQHGAS EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH KLQMYYIGSKERPIFRTAPYTDQAQTFDRLYPGHNEANFWDFFFPGLYESWQGWAKDMKT HEEEEEECCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHCCC RPVADDITQTAPYTDAITGKLIVSFFHPLWTADRQDVAGTAGADITLDQLAQIVENVKVA CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHH QSGFGFLAMSDGNVVAINSTGEKTLGLRSASDASAAGALTGLERSLKGSSQPAIAKLALD HCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHC REQGIQHLLLQQDGNDVPYIAIVKKLPATNLWVSGPARQEAMLLGVVVPEREIDASLYAA HHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCHHHHHHHHHH QAKISEATNRIVLYQILAILLSLLIVTIAVFAASKRITSGISALAGAAKRIQAKDYSVRV HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE AISSRDEVGEAGEAFNRMAEEISYHTENLEQLVEERTAQIEDAKEEISTLNAQLQRENRR EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGTELAVAERIQLMVLPLDQELEDFQALEIAAYMRPAEEVGGDYYDVLKNGSRLKIGIGD HCHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHCCCCEEEEEECC VTGHGLESGVLMLMVQSVARALQEAGNTDAVEFLTHLNSALFKNIVRTKIDKHLTLAFLD CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE YDGKEMILSGQHEEVVVVRANGEVERIDTMDLGIPIGLEADISAFIKTREIAFEKGDLIL CCCCEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHEECCCCEEE LHTDGVTEAENDAGELFGMDRLCCEAVRLRNLSAEKVVSEIVATLMLFIGSQKIYDDITL EECCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCEEE LAVRHR EEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]