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The map label for this gene is xylR [H]

Identifier: 209549281

GI number: 209549281

Start: 1713611

End: 1714786

Strand: Reverse

Name: xylR [H]

Synonym: Rleg2_1684

Alternate gene names: 209549281

Gene position: 1714786-1713611 (Counterclockwise)

Preceding gene: 209549286

Following gene: 209549280

Centisome position: 37.79

GC content: 65.22

Gene sequence:

>1176_bases
ATGCGCGCGATCAATCGCTTGAACGTGCTCGATACCATCCGGCGCCATGGTCCGATCTCGCGCATCGAGATCAGCGAACG
CACCGAGCTTTCGACCACCACCGTTTCCGCCATCACCGCCTCGCTGCTCGACGACGGGCTGATCCTGCCGCGCCATGAAG
GCGATATCCGCAACGAGGCGGTGCGCGGCAGGCCGCGCGTGGCGCTGGAGCTCAACCCGGACGCCGCCCGCGTCGTCGGC
GGCAAGATCGCCGCCAATAGGATGGTCTTCGTCGTAACCAATTTTCGTGGTGACGTGCTGTCGAAACTCTCCCTGCCGAT
CCGCATCGACCGGCAGCCGATCGGCGTCATCGCCGATCTCGTCGAGGATGGTGTGCGGCGCTGCGTCGTCGATGCCGGGC
TGTCGCTTGAAGATGTCGACAGCGTCTGCCTCGGCTTTCCCGGCGTCATCGAGCACCGCACCGGTTACATAAGAAGCAGC
CCGATCTTTCGCGACACCAACGTCGATTTCGCCGCCGAAATGTCGACGCGGCTGTCGACGCCGACGATCGTCGAGAGCGA
CGCGCATGCCATCACGCTGGGCCATCACTGGTTCGGGAAGGCGCGCGATCTCGAGGATATGGTGTTGATTTCGCTGGAAC
AAACGCTGGGGCTCGGCGTGCTGCACGGCAACAGCCTGTTTCGCGGCGCCGGCGGCCTCAGCCACAATCTCGGCGACCTG
GTGCTCGGCATGGGACCAAACGGCGTGATCCGGCTTTTCAGCCAGGCCGGCGAAAGCGCCATCCTCGGCGAACAGCCGAC
CGACGGGCGTTTTGCCGAAGCGATCCGGCTCGGCCGCGGCATGACCCATGCCCAGGCGCTGATCAAAGCGGATGACGACC
GGCTGATCGGTGCGGCCATCCGCGCCGGCGAAGCGGTGGGGCTGACCATCGCCAATATCGTCACGCTGTTTGCGCCGCCC
CGCGTCATTCTTGTGGGGTCGAGCCTGGCGCTCGGCGAACCCTTTCTGAACAGCCTGCGCGATGCCTATGCGCTCGCCAT
TCCGCCCTCGCTGAAGGGGGTGAGCGAACTCGTCTTCGACGATTCGAGCGATGATTTCTGGGCGCAGGGCGCGGCTGCCG
TGGCGCTATACGAGCTTTACGAATCGCCCTGGAGCACCACCGGGCCGGCGCTCTGA

Upstream 100 bases:

>100_bases
GGATTGCCTGCTATTTATTTCGTAACCCGTTAAAAATATTGGGTTCCGCCCAACAAACGATGCCGGCTAGTTTTTTATGA
AGACCGCAGATCCAGAATTG

Downstream 100 bases:

>100_bases
CGGGCGCACAATCACGATCAGATGGAGGAATTCATGGAGAGAGTCGGTATCGGCATCATCGGATGCGGCAATATTTCGGG
CGCCTATCTCACGGCGATGG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MRAINRLNVLDTIRRHGPISRIEISERTELSTTTVSAITASLLDDGLILPRHEGDIRNEAVRGRPRVALELNPDAARVVG
GKIAANRMVFVVTNFRGDVLSKLSLPIRIDRQPIGVIADLVEDGVRRCVVDAGLSLEDVDSVCLGFPGVIEHRTGYIRSS
PIFRDTNVDFAAEMSTRLSTPTIVESDAHAITLGHHWFGKARDLEDMVLISLEQTLGLGVLHGNSLFRGAGGLSHNLGDL
VLGMGPNGVIRLFSQAGESAILGEQPTDGRFAEAIRLGRGMTHAQALIKADDDRLIGAAIRAGEAVGLTIANIVTLFAPP
RVILVGSSLALGEPFLNSLRDAYALAIPPSLKGVSELVFDDSSDDFWAQGAAAVALYELYESPWSTTGPAL

Sequences:

>Translated_391_residues
MRAINRLNVLDTIRRHGPISRIEISERTELSTTTVSAITASLLDDGLILPRHEGDIRNEAVRGRPRVALELNPDAARVVG
GKIAANRMVFVVTNFRGDVLSKLSLPIRIDRQPIGVIADLVEDGVRRCVVDAGLSLEDVDSVCLGFPGVIEHRTGYIRSS
PIFRDTNVDFAAEMSTRLSTPTIVESDAHAITLGHHWFGKARDLEDMVLISLEQTLGLGVLHGNSLFRGAGGLSHNLGDL
VLGMGPNGVIRLFSQAGESAILGEQPTDGRFAEAIRLGRGMTHAQALIKADDDRLIGAAIRAGEAVGLTIANIVTLFAPP
RVILVGSSLALGEPFLNSLRDAYALAIPPSLKGVSELVFDDSSDDFWAQGAAAVALYELYESPWSTTGPAL
>Mature_391_residues
MRAINRLNVLDTIRRHGPISRIEISERTELSTTTVSAITASLLDDGLILPRHEGDIRNEAVRGRPRVALELNPDAARVVG
GKIAANRMVFVVTNFRGDVLSKLSLPIRIDRQPIGVIADLVEDGVRRCVVDAGLSLEDVDSVCLGFPGVIEHRTGYIRSS
PIFRDTNVDFAAEMSTRLSTPTIVESDAHAITLGHHWFGKARDLEDMVLISLEQTLGLGVLHGNSLFRGAGGLSHNLGDL
VLGMGPNGVIRLFSQAGESAILGEQPTDGRFAEAIRLGRGMTHAQALIKADDDRLIGAAIRAGEAVGLTIANIVTLFAPP
RVILVGSSLALGEPFLNSLRDAYALAIPPSLKGVSELVFDDSSDDFWAQGAAAVALYELYESPWSTTGPAL

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=246, Percent_Identity=22.3577235772358, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787878, Length=350, Percent_Identity=23.1428571428571, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 41859; Mature: 41859

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAINRLNVLDTIRRHGPISRIEISERTELSTTTVSAITASLLDDGLILPRHEGDIRNEA
CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHH
VRGRPRVALELNPDAARVVGGKIAANRMVFVVTNFRGDVLSKLSLPIRIDRQPIGVIADL
HCCCCCEEEEECCCHHHHHCCEEECCEEEEEEECCCCHHHHHCCCCEEECCCCHHHHHHH
VEDGVRRCVVDAGLSLEDVDSVCLGFPGVIEHRTGYIRSSPIFRDTNVDFAAEMSTRLST
HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCEECCCEEECCCCCHHHHHHHHCCC
PTIVESDAHAITLGHHWFGKARDLEDMVLISLEQTLGLGVLHGNSLFRGAGGLSHNLGDL
CEEEECCCCEEEECHHHCCCCCCCCHHHEEEEHHHHCEEEEECCCEECCCCCCCCCCCCE
VLGMGPNGVIRLFSQAGESAILGEQPTDGRFAEAIRLGRGMTHAQALIKADDDRLIGAAI
EEECCCHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCEEHHHH
RAGEAVGLTIANIVTLFAPPRVILVGSSLALGEPFLNSLRDAYALAIPPSLKGVSELVFD
HCCCCHHHHHHHHHHHCCCCEEEEEECCHHCCHHHHHHHHHHEEEECCCCCCCHHHHHCC
DSSDDFWAQGAAAVALYELYESPWSTTGPAL
CCCCCHHHCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRAINRLNVLDTIRRHGPISRIEISERTELSTTTVSAITASLLDDGLILPRHEGDIRNEA
CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHH
VRGRPRVALELNPDAARVVGGKIAANRMVFVVTNFRGDVLSKLSLPIRIDRQPIGVIADL
HCCCCCEEEEECCCHHHHHCCEEECCEEEEEEECCCCHHHHHCCCCEEECCCCHHHHHHH
VEDGVRRCVVDAGLSLEDVDSVCLGFPGVIEHRTGYIRSSPIFRDTNVDFAAEMSTRLST
HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCEECCCEEECCCCCHHHHHHHHCCC
PTIVESDAHAITLGHHWFGKARDLEDMVLISLEQTLGLGVLHGNSLFRGAGGLSHNLGDL
CEEEECCCCEEEECHHHCCCCCCCCHHHEEEEHHHHCEEEEECCCEECCCCCCCCCCCCE
VLGMGPNGVIRLFSQAGESAILGEQPTDGRFAEAIRLGRGMTHAQALIKADDDRLIGAAI
EEECCCHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCEEHHHH
RAGEAVGLTIANIVTLFAPPRVILVGSSLALGEPFLNSLRDAYALAIPPSLKGVSELVFD
HCCCCHHHHHHHHHHHCCCCEEEEEECCHHCCHHHHHHHHHHEEEECCCCCCCHHHHHCC
DSSDDFWAQGAAAVALYELYESPWSTTGPAL
CCCCCHHHCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA