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The map label for this gene is glcD [H]

Identifier: 209549271

GI number: 209549271

Start: 1703430

End: 1704836

Strand: Reverse

Name: glcD [H]

Synonym: Rleg2_1674

Alternate gene names: 209549271

Gene position: 1704836-1703430 (Counterclockwise)

Preceding gene: 209549272

Following gene: 209549270

Centisome position: 37.57

GC content: 60.98

Gene sequence:

>1407_bases
ATGCCGGATTATCAGACGATCAAAACGCAACTCGAAGGCATTGCCGTCGAGGACAATCCGGCGCTGGTGCGCCAGAAGAG
CCGCGATTTTTACTGGTATTCGCCGGTCCTGAAGGCGCAGCTCGACAATGTCACGGCCGATCTCGTCGTCACCCCGAAAA
ACGAAGACGAGGTCATCCGGACCCTGAAGGTCGCCTTCGCGCACGGCGTGCCGGTGACGCCGCGCGGCGCCGGCACCGGC
AATTACGGCCAAGCCATGCCGCTTTCCGGCGGCATCGTGCTCAACCTTGCCGCCATGGACAAGATCAAGGAAATCCATCC
CGGCCGGGTGATCTGCGAACCGGGCATCGTCATTGCCCAGCTCGACAAGCAGACCAAGGCGCATTCCGGCCAGGAACTAC
GCTTCCACCCGTCGACGGCGCAGACGGCAACGGTCGGCGGCTTTATCGCCGGCGGCTCCGGCGGCGTCGGCTCGATCACC
TGGGGCGGTCTGCGCGATCTCGGCAATATTCTGCGTCTGCGCGTCGTCACCATGGAGGCAGAGCCGCGCGTGCTCGACCT
CACCGGCTGGGACCTGCAGAAGGTCAGCCATGCCTACGGTACCAACGGCATCATCACCGAAATCGAAATGCCGCTCGCCC
CTGCCTATGATTGGGTCGACGTGCTTGTCGGCTATGACGACTTCATGGCATCGGTGCGCTTCGCGGATGCGCTGGCCAAA
TGCAACGGCATCCTCGTCAAGGAAATCGCTCCGATCGCGGCACCGATCCCGCACGATTATTTCACCCGCCACAGGCCCTA
TATCCGCAAGGGCCAGTCGGTGGTGGTGCTGATGATCGCGCCGCATTCGATGGATGCCTTCCTCGCCTTTTCAGCCGCCC
ACAAGGGCGAGATCATCTTCCGCTCCGACACGGTCGAAAGCATGAAAGGTATTCCGCATGCCTATGAGCTTGCCTGGAAC
CACACGACGCTGCGTGCGCTGAAGGTCGATCCCGGCTTCACCTATCTGCAGGTTCAGTATCCGGGCCCGGATCACGTCGC
CAAGGTCGCCAAGATGGTCGAGATCTTCGGCGACGAAGTGCCTGGACATCTCGAATTCATCAGATTCGACGGGCAGATCC
AATGCTCCGGCCTGCCGCTGGTGCGCTATACCACGGAGGAGCGCCTCGAAGAGATCATCAAGATCCACCAGGATCACGGC
TGCCCGATCTTCAATCCGCATCGCTATACGCTTGAAGAAGGTGGCATGAAGCGCACCGACAAGGTACAGCTCGCCTTCAA
GCAGGAAACCGACCCGAGGGGGCTGTTGAACCCCGGCAAGATGATCGCCTGGGAAAATCCCGATTTCGATTTCAACGCCG
GCGAGAATTATCTCTTCCCGGGGCTTGCGAGCGTCATGGAGGCCTGA

Upstream 100 bases:

>100_bases
TCCCGTCCGCAGTCTGACCGCGTCGTGCTTCGCCGCGGCAAGGTGATCGACCGCAGCCTGCCGGACTATCGTGAACTCGA
CAGCGTCGTTGGAGCATGAC

Downstream 100 bases:

>100_bases
TGAGAGTTCTCGTGCTTCATTCGCATCCGGTCGAGGAAAGCTACGGCAAAGCGCTCTACAAACAGACGCTGGAAAGCCTG
CGAGAGGCCGGTCACGCGGT

Product: FAD linked oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MPDYQTIKTQLEGIAVEDNPALVRQKSRDFYWYSPVLKAQLDNVTADLVVTPKNEDEVIRTLKVAFAHGVPVTPRGAGTG
NYGQAMPLSGGIVLNLAAMDKIKEIHPGRVICEPGIVIAQLDKQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSIT
WGGLRDLGNILRLRVVTMEAEPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYDWVDVLVGYDDFMASVRFADALAK
CNGILVKEIAPIAAPIPHDYFTRHRPYIRKGQSVVVLMIAPHSMDAFLAFSAAHKGEIIFRSDTVESMKGIPHAYELAWN
HTTLRALKVDPGFTYLQVQYPGPDHVAKVAKMVEIFGDEVPGHLEFIRFDGQIQCSGLPLVRYTTEERLEEIIKIHQDHG
CPIFNPHRYTLEEGGMKRTDKVQLAFKQETDPRGLLNPGKMIAWENPDFDFNAGENYLFPGLASVMEA

Sequences:

>Translated_468_residues
MPDYQTIKTQLEGIAVEDNPALVRQKSRDFYWYSPVLKAQLDNVTADLVVTPKNEDEVIRTLKVAFAHGVPVTPRGAGTG
NYGQAMPLSGGIVLNLAAMDKIKEIHPGRVICEPGIVIAQLDKQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSIT
WGGLRDLGNILRLRVVTMEAEPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYDWVDVLVGYDDFMASVRFADALAK
CNGILVKEIAPIAAPIPHDYFTRHRPYIRKGQSVVVLMIAPHSMDAFLAFSAAHKGEIIFRSDTVESMKGIPHAYELAWN
HTTLRALKVDPGFTYLQVQYPGPDHVAKVAKMVEIFGDEVPGHLEFIRFDGQIQCSGLPLVRYTTEERLEEIIKIHQDHG
CPIFNPHRYTLEEGGMKRTDKVQLAFKQETDPRGLLNPGKMIAWENPDFDFNAGENYLFPGLASVMEA
>Mature_467_residues
PDYQTIKTQLEGIAVEDNPALVRQKSRDFYWYSPVLKAQLDNVTADLVVTPKNEDEVIRTLKVAFAHGVPVTPRGAGTGN
YGQAMPLSGGIVLNLAAMDKIKEIHPGRVICEPGIVIAQLDKQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSITW
GGLRDLGNILRLRVVTMEAEPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYDWVDVLVGYDDFMASVRFADALAKC
NGILVKEIAPIAAPIPHDYFTRHRPYIRKGQSVVVLMIAPHSMDAFLAFSAAHKGEIIFRSDTVESMKGIPHAYELAWNH
TTLRALKVDPGFTYLQVQYPGPDHVAKVAKMVEIFGDEVPGHLEFIRFDGQIQCSGLPLVRYTTEERLEEIIKIHQDHGC
PIFNPHRYTLEEGGMKRTDKVQLAFKQETDPRGLLNPGKMIAWENPDFDFNAGENYLFPGLASVMEA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI37595754, Length=132, Percent_Identity=34.8484848484849, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI119964728, Length=215, Percent_Identity=26.5116279069767, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1789351, Length=208, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320764, Length=177, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 51653; Mature: 51522

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDYQTIKTQLEGIAVEDNPALVRQKSRDFYWYSPVLKAQLDNVTADLVVTPKNEDEVIR
CCCHHHHHHHHCCEEECCCCHHHHCCCCCEEEECHHHHHHHCCCEEEEEEECCCHHHHHH
TLKVAFAHGVPVTPRGAGTGNYGQAMPLSGGIVLNLAAMDKIKEIHPGRVICEPGIVIAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCEEEECCCEEEEE
LDKQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSITWGGLRDLGNILRLRVVTMEA
ECCHHHHCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCCHHHHHHEEEEEEEEEEC
EPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYDWVDVLVGYDDFMASVRFADALAK
CCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
CNGILVKEIAPIAAPIPHDYFTRHRPYIRKGQSVVVLMIAPHSMDAFLAFSAAHKGEIIF
HCCEEEEHHCHHCCCCCCHHHHCCCCHHHCCCEEEEEEEECCCCCCCEEEECCCCCCEEE
RSDTVESMKGIPHAYELAWNHTTLRALKVDPGFTYLQVQYPGPDHVAKVAKMVEIFGDEV
ECCCHHHHHCCCCEEEEEECCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
PGHLEFIRFDGQIQCSGLPLVRYTTEERLEEIIKIHQDHGCPIFNPHRYTLEEGGMKRTD
CCCEEEEEECCEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC
KVQLAFKQETDPRGLLNPGKMIAWENPDFDFNAGENYLFPGLASVMEA
EEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEECCCHHHHHCC
>Mature Secondary Structure 
PDYQTIKTQLEGIAVEDNPALVRQKSRDFYWYSPVLKAQLDNVTADLVVTPKNEDEVIR
CCHHHHHHHHCCEEECCCCHHHHCCCCCEEEECHHHHHHHCCCEEEEEEECCCHHHHHH
TLKVAFAHGVPVTPRGAGTGNYGQAMPLSGGIVLNLAAMDKIKEIHPGRVICEPGIVIAQ
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCEEEECCCEEEEE
LDKQTKAHSGQELRFHPSTAQTATVGGFIAGGSGGVGSITWGGLRDLGNILRLRVVTMEA
ECCHHHHCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCCHHHHHHEEEEEEEEEEC
EPRVLDLTGWDLQKVSHAYGTNGIITEIEMPLAPAYDWVDVLVGYDDFMASVRFADALAK
CCCEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
CNGILVKEIAPIAAPIPHDYFTRHRPYIRKGQSVVVLMIAPHSMDAFLAFSAAHKGEIIF
HCCEEEEHHCHHCCCCCCHHHHCCCCHHHCCCEEEEEEEECCCCCCCEEEECCCCCCEEE
RSDTVESMKGIPHAYELAWNHTTLRALKVDPGFTYLQVQYPGPDHVAKVAKMVEIFGDEV
ECCCHHHHHCCCCEEEEEECCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
PGHLEFIRFDGQIQCSGLPLVRYTTEERLEEIIKIHQDHGCPIFNPHRYTLEEGGMKRTD
CCCEEEEEECCEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC
KVQLAFKQETDPRGLLNPGKMIAWENPDFDFNAGENYLFPGLASVMEA
EEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEECCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]