Click here to switch to the map view.

The map label for this gene is ycbU

Identifier: 209400442

GI number: 209400442

Start: 1135807

End: 1136259

Strand: Direct

Name: ycbU

Synonym: ECH74115_1105

Alternate gene names: 209400442

Gene position: 1135807-1136259 (Clockwise)

Preceding gene: 209396888

Following gene: 209400946

Centisome position: 20.38

GC content: 48.79

Gene sequence:

>453_bases
ATGCATATTTATGGGAATGTGGTCGATCAGGGCTGTGATGTCGCCACCAAAAGTGCATTACAAAATATTCATATTGGTGA
TTTTAATATCAGTGATTTTCAGGCCGCGAATACCGTAAGCACTGCTGCTGATTTGAATATCGATATCACCGGTTGTGCCG
CTGGTATTACTGGCGCGGACGTCCTTTTTAGCGGCGAGGCTGACACCCTTGCGCCGACACTGCTCAAACTAACTGACACA
GGCGGAAGCGGTGGTATGGCAACGGGGATTGCCGTGCAAATTCTTGATGCGCAAAGTCAGCAAGAAATCCCGCTCAATCA
GGTCCAGCCTCTTACGCCCTTAAAAGCCGGGGATAACACACTCAAATATCAACTTCGTTATAAGTCCACAAAGGCGGGAG
CAACGGGCGGTAATGCGACGGCGGTTCTCTATTTTGATCTGGTTTACCAGTGA

Upstream 100 bases:

>100_bases
CGTGAACGTATGAAGAAAAAAAACGATATTTCAGTGCGTTATCTTGTTCTTTAGCATTCTTAACATCCATGTCGGGATGG
CTGGGCCTGAACAAGTTAGT

Downstream 100 bases:

>100_bases
AGGAGTGATGTTGAAACGGATAATCTGGATTCTGTTCTTACTGGGATTAACGGGGGGGTGTGAGCTATTTGCCCATGATG
GCACGGTCAACATTAGCGGA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDT
GGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ

Sequences:

>Translated_150_residues
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDT
GGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ
>Mature_150_residues
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAPTLLKLTDT
GGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKSTKAGATGGNATAVLYFDLVYQ

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787174, Length=150, Percent_Identity=100, Blast_Score=301, Evalue=1e-83,
Organism=Escherichia coli, GI1787781, Length=156, Percent_Identity=32.6923076923077, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCBU_ECOLI (P75859)

Other databases:

- EMBL:   U00096
- EMBL:   AP009048
- PIR:   E64834
- RefSeq:   AP_001572.1
- RefSeq:   NP_415462.1
- ProteinModelPortal:   P75859
- SMR:   P75859
- STRING:   P75859
- EnsemblBacteria:   EBESCT00000001234
- EnsemblBacteria:   EBESCT00000014973
- GeneID:   945561
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0925
- KEGG:   eco:b0942
- EchoBASE:   EB3477
- EcoGene:   EG13713
- eggNOG:   COG3539
- GeneTree:   EBGT00050000008612
- HOGENOM:   HBG701898
- OMA:   MATWIAV
- ProtClustDB:   CLSK879854
- BioCyc:   EcoCyc:G6484-MONOMER
- Genevestigator:   P75859
- GO:   GO:0009289
- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779
- Gene3D:   G3DSA:2.60.40.1090

Pfam domain/function: PF00419 Fimbrial; SSF49401 Adhes_bact

EC number: NA

Molecular weight: Translated: 15552; Mature: 15552

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGAD
CEEECCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
VLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNT
EEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCE
LKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEEEECCCCCCCCCCCEEEEEEEEEEEC
>Mature Secondary Structure
MHIYGNVVDQGCDVATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGAD
CEEECCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
VLFSGEADTLAPTLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNT
EEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCE
LKYQLRYKSTKAGATGGNATAVLYFDLVYQ
EEEEEEECCCCCCCCCCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503