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The map label for this gene is ycbR [H]

Identifier: 209396888

GI number: 209396888

Start: 1131345

End: 1132019

Strand: Direct

Name: ycbR [H]

Synonym: ECH74115_1101

Alternate gene names: 209396888

Gene position: 1131345-1132019 (Clockwise)

Preceding gene: 209396269

Following gene: 209400442

Centisome position: 20.3

GC content: 46.37

Gene sequence:

>675_bases
GTGACCGTAAGTTTAACGGCAATATTACTCAGCTGTTCGTCCACATGGGCGGCAGGTAAAGGCGGGGTTGGACTTGCAGC
AACACGTCTTGTTTATTCGGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTGA
TTCAGTCATGGGTGATGACCCCAGATAATAAAAAATCAGCGGACTTTATTATTACACCACCGCTATTTGTGCTGAATCCG
GCAAACGAGAATCTGTTACGCATTATGTACATTGGCGCGCCGTTGGCGAAAGACAGAGAAACTCTTTTCTTCACTAGCGT
ACGGGCAGTCCCTTCAACAACGAAGCGGGAAGAAGGCAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCT
GGCGACCAAAAGGTTTAGCGTATCCCTTAGGCGAGGCTCCGGCGAAACTGCGTTGCACTTCGTCAGCTGACATGGTTACG
GTCAGTAACCCAACACCTTATTTCATTACCCTGACAGACCTGAAAATAGGTGGAAAGTTAGTTAAAAATCAAATGATTTC
CCCCTTTGATAAATACCAATTCTCTCTGCCAAAGGGTGCCAAAAATAGCAGCGTAACGTATCGAACCATCAATGACTACG
GGGCGGAAACGCCGCAACTCAACTGTAAATCGTAA

Upstream 100 bases:

>100_bases
TTAATTGTTTTATTAATTAGTACCCCTCCAGTGTTATGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAA
CTTGCATAACAAAGGGAATT

Downstream 100 bases:

>100_bases
TTCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCACCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTT
TATTGGTGGGCTGGTGGTGT

Product: periplasmic pilus chaperone family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNP
ANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVT
VSNPTPYFITLTDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS

Sequences:

>Translated_224_residues
MTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNP
ANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVT
VSNPTPYFITLTDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
>Mature_223_residues
TVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNPA
NENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTV
SNPTPYFITLTDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS

Specific function: Could be required for the biogenesis of the putative ycbQ fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1787171, Length=224, Percent_Identity=97.7678571428571, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI1790771, Length=224, Percent_Identity=43.3035714285714, Blast_Score=174, Evalue=4e-45,
Organism=Escherichia coli, GI1786743, Length=207, Percent_Identity=39.6135265700483, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789532, Length=225, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788677, Length=203, Percent_Identity=35.4679802955665, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=31.7180616740088, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1786936, Length=206, Percent_Identity=33.0097087378641, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87081806, Length=222, Percent_Identity=33.7837837837838, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786333, Length=227, Percent_Identity=28.1938325991189, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788428, Length=206, Percent_Identity=26.2135922330097, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 24476; Mature: 24344

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMT
CEEEEEEEEEECCCCCCCCCCCCCHHEEEEEECCCCCEEEEEECCCCCCCCHHHHHHCCC
PDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGN
CCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCC
TLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKL
EEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEEEEEEEECCHHH
VKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
HHHHCCCCHHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC
>Mature Secondary Structure 
TVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMT
EEEEEEEEEECCCCCCCCCCCCCHHEEEEEECCCCCEEEEEECCCCCCCCHHHHHHCCC
PDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGN
CCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCC
TLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKL
EEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEEEEEEEECCHHH
VKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
HHHHCCCCHHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]