| Definition | Escherichia coli O157:H7 str. EC4115, complete genome. |
|---|---|
| Accession | NC_011353 |
| Length | 5,572,075 |
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The map label for this gene is gtdA
Identifier: 209399809
GI number: 209399809
Start: 3003416
End: 3004444
Strand: Reverse
Name: gtdA
Synonym: ECH74115_3270
Alternate gene names: NA
Gene position: 3004444-3003416 (Counterclockwise)
Preceding gene: 209398712
Following gene: 209400558
Centisome position: 53.92
GC content: 55.59
Gene sequence:
>1029_bases ATGACTGATAACAATCAAAATAGCCGCGAGCAATTTTATCAGCATATTTCCGGGCAAAACCTGACCCCGCTGTGGGAGTC ACTGCACCATCTGGTGCCGAAAACGCCCAACGCTAACTGTGCGCCAGCGTACTGGAATTATCAGGAGATCCGCCCGCTGC TACTGGAGAGCGGCGGCCTGATTGGTGCGAAAGAGGCCGTGCGCCGCGTGCTGGTGCTGGAAAACCCGGCGCTGCGCGGG CAGTCTTCCATTACCGCGACTTTATATGCCGGTTTGCAACTGATCATGCCGGGCGAAGTGGCACCGAGTCATCGTCATAA TCAGTCGGCGCTGCGTTTTATTGTTGAAGGCAAAGGGGCATTTACCGCCGTTGATGGCGAACGCACGCCAATGAATGAAG GCGATTTTATCCTGACCCCGCAGTGGCGCTGGCACGATCACGGTAACCCTGGCGACGAACCGGTTATCTGGCTCGATGGG CTGGATCTGCCATTAGTGAATATTCTGGGCTGCGGTTTTGCCGAAGATTATCCGGAAGAGCAACAACCGGTAACGCGTAA AGAGGGAGATTATCTGCCGCGTTACGCTGCCAATATGTTGCCGCTGCGGCATCAGACGGGGAACTCCTCGCCGATCTTTA ACTATCGTTATGACCGCAGCCGCGAAGTGCTGCACGATTTAACCCGACTGGGCGATGCCGACGAGTGGGATGGCTACAAA ATGCGCTACGTCAACCCGGTCACCGGCGGCTATCCGATGCCGTCGATGGGCGCTTTCCTGCAACTGCTGCCGAAAGGGTT TGCCTCACGCGTTGCGCGTACCACTGACAGCACCATCTACCATGTGGTGGAAGGTAGCGGGCAGGTCATCATCGGCAATG AAACCTTCAGCTTTAGTGCAAAAGATATCTTCGTGGTGCCGACCTGGCATGGCGTGTCGTTCCAGACCACGCAAGATTCC GTTTTATTTAGTTTTTCGGACAGACCGGTACAAGAAGCCCTGGGGCTGTTCCGCGAAGCGCGTTATTAA
Upstream 100 bases:
>100_bases CGGTGATGTTAACCCTGCTGATTACCGTGGTTCGCCAGTCGACCTCTGTCCCTGACTCACTGCCTCGCGCAGGCGTTGTG AACGAATAAGGAGCATCTCA
Downstream 100 bases:
>100_bases TTTAGGAGAGAAAAATGACTCAATACGTATTCGAACCGCAAGCGCCCGTTACCGTACCGGTTGTTGGCAGTGATGAACAA TTCCCCGTGCGCCGCGTTTA
Product: gentisate 1,2-dioxygenase
Products: NA
Alternate protein names: Cupin 2 Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Barrel; Cupin 2 Conserved Barrel Domain-Containing Protein; Gentisate 1 2-Dioxygenase Oxidoreductase Protein; 1 2-Dioxygenase; Gentisate 1 2-Dioxygenase Oxidoreductase; Dioxygenase Oxidoreductase Protein; Dioxygenase; Cupin 2 Protein; 1-Hydroxy-2-Naphthoate Dioxygenase
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MTDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGGLIGAKEAVRRVLVLENPALRG QSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDG LDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYK MRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTTQDS VLFSFSDRPVQEALGLFREARY
Sequences:
>Translated_342_residues MTDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGGLIGAKEAVRRVLVLENPALRG QSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDG LDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYK MRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTTQDS VLFSFSDRPVQEALGLFREARY >Mature_341_residues TDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGGLIGAKEAVRRVLVLENPALRGQ SSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL DLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKM RYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSAKDIFVVPTWHGVSFQTTQDSV LFSFSDRPVQEALGLFREARY
Specific function: Unknown
COG id: COG3435
COG function: function code Q; Gentisate 1,2-dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38480; Mature: 38348
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGGL CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCC IGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGA CCHHHHHHEEHEECCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEEEECCCC FTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNILGCGFAEDYPEE EEEECCCCCCCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCC QQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYK CCCCCCCCCCCCHHHHHHCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEE MRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSA EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCEEEECC KDIFVVPTWHGVSFQTTQDSVLFSFSDRPVQEALGLFREARY CEEEEEECCCCCEEECCCCCEEEEECCCCHHHHHHHHHHCCC >Mature Secondary Structure TDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGGL CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCC IGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGA CCHHHHHHEEHEECCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEEEECCCC FTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNILGCGFAEDYPEE EEEECCCCCCCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCC QQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYK CCCCCCCCCCCCHHHHHHCCCEEECCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEE MRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIGNETFSFSA EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCEEEECC KDIFVVPTWHGVSFQTTQDSVLFSFSDRPVQEALGLFREARY CEEEEEECCCCCEEECCCCCEEEEECCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA