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The map label for this gene is ycdO

Identifier: 209399390

GI number: 209399390

Start: 1267473

End: 1268600

Strand: Direct

Name: ycdO

Synonym: ECH74115_1259

Alternate gene names: 209399390

Gene position: 1267473-1268600 (Clockwise)

Preceding gene: 209398317

Following gene: 209398983

Centisome position: 22.75

GC content: 51.06

Gene sequence:

>1128_bases
ATGACCATTAACTTCCGCCGTAACGCATTGCAGTTGAGCGTGGCTGCGCTGTTTTCTTCTGCTTTTATGGCTAACGCCGC
TGATGTGCCGCAGGTCAAAGTGACCGTGACGGATAAGCAGTGCGAACCGATGACCATTACGGTTAACGCCGGGAAAACAC
AGTTCATTATTCAGAACCACAGCCAGAAGGCGCTGGAATGGGAGATCCTCAAAGGCGTGATGGTGGTGGAAGAGCGGGAA
AATATCGCCCCTGGCTTTAGCCAGAAAATGACGGCGAATTTACAGCCTGGCGAATACGATATGACCTGCGGTCTGCTGAC
TAACCCGAAAGGGAAGTTGATCGTCAAAGGTGAGGCAACGGCGGATGCGGCGCAAAGTGATGCGCTGTTAAGTCTTGGTG
GTGCAATTACTGCATATAAAGCGTATGTCATGGCGGAAACCACACAGCTGGTGACCGACACCAAAGCCTTTACCGACGCG
ATTAAAGCAGGCGATATCGAAAAAGCGAAAGCACTGTATGCGCCGACGCGCCAGCACTATGAGCGCATTGAACCGATTGC
TGAACTGTTCTCCGATCTGGATGGCAGCATTGACGCCCGTGAAGATGATTACGAGCAAAAAGCCGCTGATCCAAAATTCA
CCGGTTTCCACCGTCTGGAAAAAGCATTGTTTGGCGACAACACCACCAAAGGCATGGATCAGTACGCTGACCAGCTTTAT
ACCGATGTGGTCGATTTGCAAAAACGCATCAGTGAACTGGCTTTCCCACCTTCAAAAGTGGTCGGCGGTGCAGCCGGACT
GATTGAGGAAGTGGCAGCCAGCAAAATCAGCGGTGAAGAAGATCGCTACAGCCACACCGATCTGTGGGATTTCCAGGCTA
ACGTTGAAGGCTCGCAGAAAATTGTCGATCTGCTGCGTCCACAACTGCAAAAAGCTAACCCGGAACTGTTGGCAAAAGTC
GATGCCAACTTTAAAAAGGTCGATACCATTCTGGCGAAATACCGTACTAAAGACGGTTTTGAAACCTACGACAAATTGAC
CGATGCCGACCGGAATGCACTGAAAGGACCGATTACTGCGCTGGCGGAAGATCTGGCGCAACTTCGCGGTGTGCTGGGAT
TGGATTAA

Upstream 100 bases:

>100_bases
TCTGCCACCACGCGCAGGGGCGACAGCGTCTCGCTCCGCGTAACAAATACGACGCAAACTCTTGCTTAGTTACAACATAC
TTTAAAGGGATAGTCTCGTC

Downstream 100 bases:

>100_bases
GCATTATGCAGTATGAAGATAAAAACGGCGTGAATGAACCGTCACGCCGACGTTTACTGAAAGGCATTGGTGCGCTGGCG
CTGGCGGGAAGTTGTCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERE
NIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA
IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYADQLY
TDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKV
DANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD

Sequences:

>Translated_375_residues
MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERE
NIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA
IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYADQLY
TDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKV
DANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD
>Mature_374_residues
TINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNHSQKALEWEILKGVMVVEEREN
IAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAI
KAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYADQLYT
DVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVD
ANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family

Homologues:

Organism=Escherichia coli, GI1787254, Length=375, Percent_Identity=99.7333333333333, Blast_Score=768, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDO_ECO57 (Q8XAS6)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   H85646
- PIR:   H90786
- RefSeq:   NP_287025.1
- RefSeq:   NP_309291.1
- ProteinModelPortal:   Q8XAS6
- SMR:   Q8XAS6
- EnsemblBacteria:   EBESCT00000028168
- EnsemblBacteria:   EBESCT00000057674
- GeneID:   913843
- GeneID:   959156
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1520
- KEGG:   ecs:ECs1264
- GeneTree:   EBGT00050000009850
- HOGENOM:   HBG570979
- OMA:   TFPPEKV
- ProtClustDB:   PRK10378
- BioCyc:   ECOL83334:ECS1264-MONOMER
- InterPro:   IPR008972
- InterPro:   IPR018976
- Gene3D:   G3DSA:2.60.40.420

Pfam domain/function: PF09375 Peptidase_M75; SSF49503 Cupredoxin

EC number: NA

Molecular weight: Translated: 41124; Mature: 40993

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNH
CEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECC
SQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEAT
CCHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCEEEECCCC
ADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHY
CCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH
ERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYADQLY
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
TDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQK
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHH
IVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITA
HHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCHHHH
LAEDLAQLRGVLGLD
HHHHHHHHHHHCCCC
>Mature Secondary Structure 
TINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPMTITVNAGKTQFIIQNH
EECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECC
SQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMTCGLLTNPKGKLIVKGEAT
CCHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCEEEECCCC
ADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDAIKAGDIEKAKALYAPTRQHY
CCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH
ERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHRLEKALFGDNTTKGMDQYADQLY
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
TDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANVEGSQK
HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHH
IVDLLRPQLQKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITA
HHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCHHHH
LAEDLAQLRGVLGLD
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796