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The map label for this gene is ycdB

Identifier: 209398983

GI number: 209398983

Start: 1268606

End: 1269877

Strand: Direct

Name: ycdB

Synonym: ECH74115_1260

Alternate gene names: 209398983

Gene position: 1268606-1269877 (Clockwise)

Preceding gene: 209399390

Following gene: 209400137

Centisome position: 22.77

GC content: 53.62

Gene sequence:

>1272_bases
ATGCAGTATGAAGATAAAAACGGCGTGAATGAACCGTCACGCCGACGTTTACTGAAAGGCATTGGTGCGCTGGCGCTGGC
GGGAAGTTGTCCGGTCGCTCATGCACAAAAAACGCAAAGTGCGCCGGGTACGCTTTCACCGGTTGCACGCAATGAGAAAC
AGCCGTTTTATGGTGAGCATCAGGCAGGGATCCTGACGCCACAACAGGCCGCAATGATGCTGGTGGCGTTTGATGTGCTT
GCCAGCGATAAAGCCGATCTTGAACGGTTGTTTCGCTTGTTGACTCAGCGTTTTGCTTTTCTGACTCAGGGCGGAGCGGC
ACCAGAAACGCCAAATCCGCGCCTGCCACCACTCGATTCCGGCATTCTTGGCGGCTACATTGCGCCCGATAATCTCACCA
TCACGTTATCGGTGGGTCACTCATTGTTTGATGAGCGCTTTGGCCTTGCGCCACAGATGCCGAAAAAGTTGCAGAAGATG
ACGCGTTTTCCCAACGACTCGCTGGATGCGGCGTTATGTCATGGTGATGTGTTGCTACAAATTTGCGCCAACACCCAGGA
CACGGTGATCCATGCACTGCGCGATATCATCAAACATACGCCGGATTTGCTCAGCGTGCGCTGGAAGCGGGAAGGGTTTA
TTTCCGATCACGCGGCGCGTAGTAAAGGCAAAGAGACGCCGATTAATTTGCTGGGTTTCAAAGACGGCACTGCTAATCCC
GATAGCCAGAATGATAAGTTGATGCAAAAAGTGGTGTGGGTAACGGCAGATCAGCAGGAGCCTGCGTGGACAATCGGTGG
CAGCTATCAGGCAGTACGCTTGATTCAGTTTCGAGTGGAATTTTGGGACAGAACGCCGCTGAAAGAACAGCAGACGATTT
TTGGCCGTGATAAGCAAACCGGTGCGCCGCTGGGAATGCAGCATGAGCATGATGTGCCTGATTACGCCAGCGACCCGGAA
GGGAAGGGGATTGCGCTGGACAGCCATATCCGGCTGGCGAATCCCCGCACGGCGGAGAGTGAGTCCAGCCTGATGCTGCG
TCGTGGCTACAGTTATTCACTGGGCGTCACCAACTCCGGGCAACTGGATATGGGGCTACTGTTTGTCTGTTACCAACACG
ATCTGGAAAAAGGCTTCCTGACAGTACAAAAAAGGCTCAATGGCGAAGCGCTGGAGGAATACGTTAAACCTATCGGCGGC
GGTTATTTTTTTGCGCTGCCGGGAGTGAAGGACGCGAACGATTATCTCGGAAGCGCGTTATTGCGGGTTTAA

Upstream 100 bases:

>100_bases
AATTGACCGATGCCGACCGGAATGCACTGAAAGGACCGATTACTGCGCTGGCGGAAGATCTGGCGCAACTTCGCGGTGTG
CTGGGATTGGATTAAGCATT

Downstream 100 bases:

>100_bases
TGTTTTTAGACGGATAAGGCGTTCTTGCGCAGATGCCTGATGCGATGCTTGCGCGTCTTCTTATGCCTACAATCGGTGCG
GGTTCGGTAGGCGGATAAGG

Product: Tat-translocated enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MQYEDKNGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPVARNEKQPFYGEHQAGILTPQQAAMMLVAFDVL
ASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM
TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
DSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPE
GKGIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGG
GYFFALPGVKDANDYLGSALLRV

Sequences:

>Translated_423_residues
MQYEDKNGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPVARNEKQPFYGEHQAGILTPQQAAMMLVAFDVL
ASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM
TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
DSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPE
GKGIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGG
GYFFALPGVKDANDYLGSALLRV
>Mature_423_residues
MQYEDKNGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPVARNEKQPFYGEHQAGILTPQQAAMMLVAFDVL
ASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM
TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
DSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPE
GKGIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGG
GYFFALPGVKDANDYLGSALLRV

Specific function: May have a role as a peroxidase

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family

Homologues:

Organism=Escherichia coli, GI1787255, Length=423, Percent_Identity=98.5815602836879, Blast_Score=861, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCDB_ECO57 (Q8XAS4)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A85647
- PIR:   A99787
- RefSeq:   NP_287026.1
- RefSeq:   NP_309292.1
- ProteinModelPortal:   Q8XAS4
- PeroxiBase:   5880
- EnsemblBacteria:   EBESCT00000024288
- EnsemblBacteria:   EBESCT00000056295
- GeneID:   912778
- GeneID:   959157
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1521
- KEGG:   ecs:ECs1265
- GeneTree:   EBGT00050000010894
- HOGENOM:   HBG296848
- OMA:   VERWDRT
- ProtClustDB:   CLSK879930
- BioCyc:   ECOL83334:ECS1265-MONOMER
- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311
- TIGRFAMs:   TIGR01413
- TIGRFAMs:   TIGR01409
- TIGRFAMs:   TIGR01412

Pfam domain/function: PF04261 Dyp_perox; SSF54909 Dimer_A_B_barrel

EC number: NA

Molecular weight: Translated: 46621; Mature: 46621

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS51404 DYP_PEROXIDASE; PS51318 TAT; PS00013 PROKAR_LIPOPROTEIN

Important sites: ACT_SITE 235-235

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYEDKNGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPVARNEKQPFYGEH
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCCCCC
QAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDS
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQ
CCCCCEECCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
HHCCCHHHHHHHHHHHHHCCCHHHEEEEHHCCCCCHHHHHCCCCCCCEEEEEECCCCCCC
DSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQT
CCCHHHHHHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
GAPLGMQHEHDVPDYASDPEGKGIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSG
CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHCCCCEEECCCCCC
QLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYLGSAL
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
LRV
HCC
>Mature Secondary Structure
MQYEDKNGVNEPSRRRLLKGIGALALAGSCPVAHAQKTQSAPGTLSPVARNEKQPFYGEH
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCCCCC
QAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDS
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQ
CCCCCEECCCCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
ICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANP
HHCCCHHHHHHHHHHHHHCCCHHHEEEEHHCCCCCHHHHHCCCCCCCEEEEEECCCCCCC
DSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQT
CCCHHHHHHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCC
GAPLGMQHEHDVPDYASDPEGKGIALDSHIRLANPRTAESESSLMLRRGYSYSLGVTNSG
CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCHHHHHHHCCCCEEECCCCCC
QLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDANDYLGSAL
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
LRV
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796