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The map label for this gene is ybdM [H]

Identifier: 209398255

GI number: 209398255

Start: 1382604

End: 1383242

Strand: Direct

Name: ybdM [H]

Synonym: ECH74115_1386

Alternate gene names: 209398255

Gene position: 1382604-1383242 (Clockwise)

Preceding gene: 209397402

Following gene: 209396558

Centisome position: 24.81

GC content: 52.58

Gene sequence:

>639_bases
ATGGGGGATTCTGTGACACCGGAGATAATTGGCAACATGATTCGTCAGTACTTCAGCCAGGAACGACCAGAAGAAGAGAC
CATACAGGCCCTTAATCACCTGCGCAGAGTGCTTCATGAAGTCAGTCCTTTTGCACATGAGCCAGTGGACTGTGTGCTGT
GGGTAAAAGCAGATGAGGTGGTGGCCAATGATTACAATCCTAATGTCATGGCGCCGGGTGAGAAGAAACTGCTGAAGCAG
TCACTGGAGAAAGATGGTTTCACACAACCGGTGGTGGTGTCTGAGGAAAAGAACCATTACCTGGTGGTGGATGGTTTTCA
TCGCCAGGTGCTGGGCAGGGAAGCAGGTACGGGAAAACGTCTGAAGGGCTGGCTGCCGGTGGTCTGTATTAATCCGGAGA
GAAAGGGACAGGCCTCACGTATTGCTGCGACCATCCGACATAACCGGGCCAGGGGCAAACATCAGATAACCTCAATGTCT
GATATTGTCAGGGACCTGTCGCGCCTGGGCTGGACGAATGAACGCATTGGTACGGAGCTGGGTATGGACCAGGATGAAGT
TCTCAGATTGAAACAGATTAGCGGGCTGACGGAGCTGTTTCAGGAAGAGGATTTCAGCCCGGCATGGACGGTTCGCTGA

Upstream 100 bases:

>100_bases
TTATAAAGAATGATTTCTGGTGCCGGCCCCTCTCCTTCAGTCCGAACAAACCCCGGCACTATGAACGTTATCTGCAGCGT
ATGAAAGAAAGGAGGAAGGA

Downstream 100 bases:

>100_bases
GACCGTCAGATATGTATATTATTTCAGTGAGTTAATGTTTTGAGCAGGAAAAAGAGTACCCCGGAAGTTGTGGAAGACAT
GGTTGCGCAGAAACTGGAGG

Product: immunoglobulin-binding regulator B homolog

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MGDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVDCVLWVKADEVVANDYNPNVMAPGEKKLLKQ
SLEKDGFTQPVVVSEEKNHYLVVDGFHRQVLGREAGTGKRLKGWLPVVCINPERKGQASRIAATIRHNRARGKHQITSMS
DIVRDLSRLGWTNERIGTELGMDQDEVLRLKQISGLTELFQEEDFSPAWTVR

Sequences:

>Translated_212_residues
MGDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVDCVLWVKADEVVANDYNPNVMAPGEKKLLKQ
SLEKDGFTQPVVVSEEKNHYLVVDGFHRQVLGREAGTGKRLKGWLPVVCINPERKGQASRIAATIRHNRARGKHQITSMS
DIVRDLSRLGWTNERIGTELGMDQDEVLRLKQISGLTELFQEEDFSPAWTVR
>Mature_211_residues
GDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVDCVLWVKADEVVANDYNPNVMAPGEKKLLKQS
LEKDGFTQPVVVSEEKNHYLVVDGFHRQVLGREAGTGKRLKGWLPVVCINPERKGQASRIAATIRHNRARGKHQITSMSD
IVRDLSRLGWTNERIGTELGMDQDEVLRLKQISGLTELFQEEDFSPAWTVR

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=214, Percent_Identity=56.0747663551402, Blast_Score=244, Evalue=4e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 24150; Mature: 24019

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVDCVLWVKADEV
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHH
VANDYNPNVMAPGEKKLLKQSLEKDGFTQPVVVSEEKNHYLVVDGFHRQVLGREAGTGKR
EECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHHCCCCCCCC
LKGWLPVVCINPERKGQASRIAATIRHNRARGKHQITSMSDIVRDLSRLGWTNERIGTEL
CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHC
GMDQDEVLRLKQISGLTELFQEEDFSPAWTVR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVDCVLWVKADEV
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHH
VANDYNPNVMAPGEKKLLKQSLEKDGFTQPVVVSEEKNHYLVVDGFHRQVLGREAGTGKR
EECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHHCCCCCCCC
LKGWLPVVCINPERKGQASRIAATIRHNRARGKHQITSMSDIVRDLSRLGWTNERIGTEL
CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHC
GMDQDEVLRLKQISGLTELFQEEDFSPAWTVR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]