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The map label for this gene is ytfH

Identifier: 209398203

GI number: 209398203

Start: 5364787

End: 5365167

Strand: Direct

Name: ytfH

Synonym: ECH74115_5729

Alternate gene names: 209398203

Gene position: 5364787-5365167 (Clockwise)

Preceding gene: 209399441

Following gene: 209397330

Centisome position: 96.28

GC content: 56.69

Gene sequence:

>381_bases
ATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAATCTCTTTGCGGAACAGTGCCCGTCGCGCGAGGTGTTGAA
ACACGTCACCAGCCGTTGGGGGGTGTTGATTCTGGTGGCGCTACGCGAAGGTACTCATCGCTTTAGCGACCTGCGGCGCA
AAATCGGCGGGGTGAGCGAAAAGATGCTTGCGCAGTCGTTACAGGCGTTAGAACAGGATGGTTTTCTTAACCGTATCGCG
TATCCGGTGGTGCCGCCGCATGTTGAATACAGCCTCACGCCGCTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGC
GGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAA

Upstream 100 bases:

>100_bases
AATAGCGATCATGGGAAGTCTCCATCGTTTTGTCTTGTGTTTAAATACGCTAACACCTAAACTTACTTTTAGTAAGTACG
CACAAAAAGGTAAGTATGAA

Downstream 100 bases:

>100_bases
CTGCCGGATGCGCGGCCTACGGTGTATGACTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGG
ATGCGATTGATGATTTATAG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIA
YPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA

Sequences:

>Translated_126_residues
MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIA
YPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA
>Mature_125_residues
SQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAY
PVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082391, Length=126, Percent_Identity=100, Blast_Score=256, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTFH_ECOLI (P0ACN2)

Other databases:

- EMBL:   U14003
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   S56437
- RefSeq:   AP_004712.1
- RefSeq:   NP_418633.4
- ProteinModelPortal:   P0ACN2
- SMR:   P0ACN2
- STRING:   P0ACN2
- EnsemblBacteria:   EBESCT00000001338
- EnsemblBacteria:   EBESCT00000017960
- GeneID:   948730
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5747
- KEGG:   eco:b4212
- EchoBASE:   EB2401
- EcoGene:   EG12508
- eggNOG:   COG1733
- GeneTree:   EBGT00050000011223
- HOGENOM:   HBG752497
- OMA:   CPSRDVL
- ProtClustDB:   CLSK2306448
- BioCyc:   EcoCyc:G7869-MONOMER
- Genevestigator:   P0ACN2
- GO:   GO:0006350
- InterPro:   IPR002577
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01638 DUF24

EC number: NA

Molecular weight: Translated: 14075; Mature: 13944

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSE
CCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHH
KMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV
HHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
RDERAA
CCCCCC
>Mature Secondary Structure 
SQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSE
CCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHH
KMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV
HHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
RDERAA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503