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The map label for this gene is ssaU [H]

Identifier: 209398003

GI number: 209398003

Start: 4718361

End: 4719398

Strand: Reverse

Name: ssaU [H]

Synonym: ECH74115_5071

Alternate gene names: 209398003

Gene position: 4719398-4718361 (Counterclockwise)

Preceding gene: 209399341

Following gene: 209397075

Centisome position: 84.7

GC content: 34.01

Gene sequence:

>1038_bases
ATGAGTGAAAAAACAGAAAAGCCCACACCCAAAAAACTAAGGGATCTAAAAAAGAAGGGCGATGTAACAAAAAGTGAAGA
GGTAATGGCTGCAGTGCAGTCATTAATCTTATTTTCATTTTTTTCTTTATATGGCATGAGTTTTTTTGTTGATATAGTTG
GATTAGTTAATACGACAATAGACTCGCTAAATAGACCGTTTTTGTATGCCATTCGAGAAATATTAGGTGCGGTATTAAAT
ATATTTTTATTATATATTTTGCCAATTTCTTTGATTGTCTTTGTTGGAACTGTTACGACTGGTGTATCACAAATAGGATT
CATCTTTGCGGTTGAAAAAATAAAACCATCGGCTCAGAAGATTAGTGTAAAAAATAACCTGAAAAATATTTTTTCTGTAA
AGAGCATTTTTGAGCTACTTAAATCAGTATTTAAGTTAGTGATAATTGTTCTCATTTTTTATTTTATGGGGCATTCATAT
GCAAATGAGTTTGCTAATTTCACAGGACTGAACGCATATCAAGCTCTTGTCGTTGTTGCCTTTTTTGTTTTTCTTTTATG
GAAAGGCGTGCTATTCGGATATCTACTCTTTTCAGTATTTGATTTCTGGTTCCAGAAGCATGAGGGACTGAAGAAAATGA
AAATGAGTAAAGATGAGGTGAAACGAGAAGCCAAGGATACTGATGGTAACCCTGAAATTAAAGGGGAGCGCCGTCGCCTT
CATTCCGAGATACAAAGTGGAAGTTTGGCTAATAACATCAAAAAATCAACCGTTATTGTTAAAAACCCGACTCACATTGC
GATTTGCCTATACTATAAACTTGGGGAGACTCCATTACCTTTAGTTATTGAAACAGGAAAAGATGCCAAAGCTCTACAGA
TCATTAAACTGGCTGAACTCTATGATATTCCAGTGATTGAAGATATTCCTTTAGCAAGAACTCTCTATAAGAATATACAT
AAAGGACAATATATAACAGAAGACTTTTTTGAACCTGTGGCACAATTGATTCGTATTGCGATAGACCTTGATTATTAA

Upstream 100 bases:

>100_bases
GCAATCTTTATATTGCTATTAGTTATTCATGTTTTTCCTGATTTTATTACGGCAAATATTCATTCTGACATAATTGATAG
ATCGTTACCGAGCATGATTA

Downstream 100 bases:

>100_bases
TCGATAATTTGCTCATTATTCTTTAATTTATTATATGTTTTATATATTTTCATTGCGTATTGCCTTCTGAGTTCTACTGC
ATTTGGTGTATTAAAGTAAC

Product: secretion system apparatus protein SsaU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDSLNRPFLYAIREILGAVLN
IFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSY
ANEFANFTGLNAYQALVVVAFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL
HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARTLYKNIH
KGQYITEDFFEPVAQLIRIAIDLDY

Sequences:

>Translated_345_residues
MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDSLNRPFLYAIREILGAVLN
IFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSY
ANEFANFTGLNAYQALVVVAFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL
HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARTLYKNIH
KGQYITEDFFEPVAQLIRIAIDLDY
>Mature_344_residues
SEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTIDSLNRPFLYAIREILGAVLNI
FLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQKISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYA
NEFANFTGLNAYQALVVVAFFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRLH
SEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARTLYKNIHK
GQYITEDFFEPVAQLIRIAIDLDY

Specific function: Part of a type III secretion system [H]

COG id: COG4792

COG function: function code U; Type III secretory pathway, component EscU

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=346, Percent_Identity=26.0115606936416, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 39192; Mature: 39061

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQALVVVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
FFVFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHH
HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL
HHHHHCCHHHHHHHHCEEEEECCCEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHH
YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY
HCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]