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The map label for this gene is yidP [H]

Identifier: 209396933

GI number: 209396933

Start: 4757987

End: 4758703

Strand: Direct

Name: yidP [H]

Synonym: ECH74115_5116

Alternate gene names: 209396933

Gene position: 4757987-4758703 (Clockwise)

Preceding gene: 209399012

Following gene: 209397580

Centisome position: 85.39

GC content: 52.16

Gene sequence:

>717_bases
ATGATCTACAAAAGCATTGCGGAGCGGTTAAGAATTCGACTTAATTCCGCGGATTTCACGCTAAACAGCCTTCTTCCCGG
TGAAAAAAAGCTGGCGGAAGAGTTTGCGGTATCGCGGATGACCATCCGTAAAGCGATTGACCTGCTGGTAGCGTGGGGGC
TGGTGGTCCGCCGCCACGGCAGCGGCACTTACCTGGTGCGCAAAGATGTGCTGCATCAAACCGCCAGCCTGACCGGGCTG
GTGGAGGTGTTAAAACGGCAGGGAAAAACAGTCACCAGCCAGGTGCTGATTTTTGAAATCATGCCTGCGCCTCCGGCAAT
TGCCAGCCAGTTGCGGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGA
TGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAACCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATAT
ATTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCGGTGCTCGCCGATAGACTGCTGGCGCG
GCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGTCATATAGCGAGAGCGGGGAGTTTTTGAATT
ATTCAGTGATGTTCAGAAATGCCAGCGAATACCAGGTGGAGTACCATTTACGGCGACTCCACCCGGACAAGAGTTAA

Upstream 100 bases:

>100_bases
AGCATCGAACACATCTTTAAAAAAAAGATGTTTTTTCAATTGATTAAGCAGAACTTGTGGGCGCATTACCCGGGCTTGCA
GGCAAAAAAGAGATCTAGAG

Downstream 100 bases:

>100_bases
CCGATACTCCAGAAGAGCACCGCCAGTAATTGGGGGGTGATAATGCGCAGGAACATCACTAACGGATAGACAGTGGCGTA
AGAGAGCGCCGCCGCACCGC

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGL
VEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPDKS

Sequences:

>Translated_238_residues
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGL
VEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPDKS
>Mature_238_residues
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGL
VEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPDKS

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=238, Percent_Identity=99.5798319327731, Blast_Score=484, Evalue=1e-138,
Organism=Escherichia coli, GI1786950, Length=224, Percent_Identity=31.25, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI87082252, Length=223, Percent_Identity=24.6636771300448, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1790540, Length=231, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788418, Length=148, Percent_Identity=25, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27314; Mature: 27314

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHG
CCHHHHHHHHHEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
SGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIY
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHEEEEECCEEE
FSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEYIEQECGILIGGNYESLTPVL
EEHEEEEECCCEEEEECCCCHHHHHHCCCHHHCCCCHHHHHHHHCCEEECCCHHHHHHHH
ADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPDKS
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHG
CCHHHHHHHHHEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
SGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMPAPPAIASQLRIQINEQIY
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHEEEEECCEEE
FSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEYIEQECGILIGGNYESLTPVL
EEHEEEEECCCEEEEECCCCHHHHHHCCCHHHCCCCHHHHHHHHCCEEECCCHHHHHHHH
ADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPDKS
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]