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The map label for this gene is yidL [H]

Identifier: 209399012

GI number: 209399012

Start: 4753863

End: 4754756

Strand: Direct

Name: yidL [H]

Synonym: ECH74115_5113

Alternate gene names: 209399012

Gene position: 4753863-4754756 (Clockwise)

Preceding gene: 209399592

Following gene: 209396933

Centisome position: 85.32

GC content: 43.18

Gene sequence:

>894_bases
ATGAATGGAAAATTGCAAACTTCAGATGTAAAAAACGAAACTCCATACAATATTCCTTTATTGATTAACGAAAATGTGAT
CTCCAGCGGAATTTCTCTGATCTCGCTCTGGCATACCTACGCCGACGAGCATTACCGGGTGATCTGGCCACGGGACAAGA
AGAAACCGCTTATCGCCAACTCATGGGTTGCGGTGTATACCGTACAAGGATGTGGGAAGATTCTTTTAAAGAATGGCGAA
CAAATAACACTGCATGGCAACTGTATTATATTTTTAAAGCCAATGGATATTCACTCTTATCACTGTGAAGGTTTAGTCTG
GGAACAATACTGGATGGAATTTACCCCCACCAGTATGATGGATATTCCCATCGGTCAGCAAAGCGTTATTTACAATGGCG
AAATTTATAATCAGGAACTCACCGAAGTTGCTGAGTTAATAACTTCACCAGAAGCAATAAAAAATAATCTGGCAGTCGCT
TTTCTGACGAAAATTATTTATCAGTGGATTTGTCTTATGTACGCAGACGGTAAAAAAGATCCACAACGGCGGCAAATTGA
AAAATTAATTGCCACTTTACATGCCAGTCTGCAACAACGCTGGAGCGTAGCCGATATGGCTGCCACGATCCCCTGTAGCG
AAGCCTGGTTGCGTCGTCTGTTTTTACGCTATACCGGAAAGACGCCGAAAGAATATTACCTCGATGCGCGTCTGGATCTG
GCGCTATCGCTATTAAAGCAACAAGGAAACTCGGTTGGCGAAGTCGCTGATACGCTCAACTTCTTCGACTCCTTTCATTT
CAGCAAAGCCTTTAAACATAAATTTGGTTATGCGCCTTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCA
GTCCACACAATTAA

Upstream 100 bases:

>100_bases
TCAGGCAGTCAGATTCTTAAAATACAAACGTCGTATCCCTGAACGGATTGTTTTCTGTTAAGTTCAGGTTGTGAGCATAA
TTCGCCGGAGGGATATTAAA

Downstream 100 bases:

>100_bases
CGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGT
TTTCGACAACGTAATCGCCT

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNGKLQTSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIANSWVAVYTVQGCGKILLKNGE
QITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDIPIGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVA
FLTKIIYQWICLMYADGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL
ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHPTDASPHN

Sequences:

>Translated_297_residues
MNGKLQTSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIANSWVAVYTVQGCGKILLKNGE
QITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDIPIGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVA
FLTKIIYQWICLMYADGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL
ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHPTDASPHN
>Mature_297_residues
MNGKLQTSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIANSWVAVYTVQGCGKILLKNGE
QITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDIPIGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVA
FLTKIIYQWICLMYADGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL
ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHPTDASPHN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510985, Length=297, Percent_Identity=99.3265993265993, Blast_Score=622, Evalue=1e-180,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33986; Mature: 33986

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKLQTSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIAN
CCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEC
SWVAVYTVQGCGKILLKNGEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMM
CEEEEEEECCCCEEEECCCCEEEEECCEEEEEEECCCCCCCCCCEEHHHHHHHCCCCCEE
DIPIGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVAFLTKIIYQWICLMYADGKKD
ECCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHEEHHHHHH
ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHPTDASPHN
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNGKLQTSDVKNETPYNIPLLINENVISSGISLISLWHTYADEHYRVIWPRDKKKPLIAN
CCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEC
SWVAVYTVQGCGKILLKNGEQITLHGNCIIFLKPMDIHSYHCEGLVWEQYWMEFTPTSMM
CEEEEEEECCCCEEEECCCCEEEEECCEEEEEEECCCCCCCCCCEEHHHHHHHCCCCCEE
DIPIGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVAFLTKIIYQWICLMYADGKKD
ECCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHEEHHHHHH
ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHPTDASPHN
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]