| Definition | Escherichia coli O157:H7 str. EC4115, complete genome. |
|---|---|
| Accession | NC_011353 |
| Length | 5,572,075 |
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The map label for this gene is dmsA [H]
Identifier: 209395905
GI number: 209395905
Start: 3467557
End: 3469938
Strand: Reverse
Name: dmsA [H]
Synonym: ECH74115_3747
Alternate gene names: 209395905
Gene position: 3469938-3467557 (Counterclockwise)
Preceding gene: 209396651
Following gene: 209397819
Centisome position: 62.27
GC content: 50.0
Gene sequence:
>2382_bases ATGGATACGCCAGACGAAAAGGAACGCATTACATTTCCGCAAGTATCACGACGTAGTTTTTTACAAGCGACTTCCGCGCT TATCACTTTGCCTTTTATTTCTTCTACCGCAAAGGCGCAATCCCCAGATGCGTCGCCAGAAGTTACAGCTCCAGTAGCTG ATAAAGTCGTGCCCACCTGTAGCACATTTGACTGCGGTGGTAAGTGCGATATTCGGGCGCATATGCGCGACGGCGTGGTG ACGCAAATTACCACGCTTCCCGATAACGAATTGGATCCACAAATGCCGATTATGCGCGCCTGTGTTCGTGGTCGCGGCTA TCGTAAATTTGTTTATCATCCAGACCGTTTGAAATATCCGATGAAGCGGGTAGGTAAACGAGGCGAGGGTAAATTTGAGC GTATCTCATGGGATGAGGCGACGACCTTAATTGCCGATAACCTGAAAAGGATCACGCAACAATATGGCCCAGCTTCACGT TATGTCCATGTCGGGACGGCTGTTTCTGGTGGAACATTTTCTGGCGATGCGATGGCGCGTCGGCTGTTAAATTTAACCGG TGGTTATCTTGAATATTATCACTCAGTTAGTCTGGGTAATACTGCGGCGGCCACGCCTTACACGTATGGCGTGGCCGCGA GCGGTAACTCGATGGATACTCTTCTGGATACCAAACTGGTGATTCTCTGGGGGCATAACCCAACGGAAACCATATTCGGT CACACCAATTACTATTTTCAAAAAATGAAGCAAAACGGTACACGTTTTATCGTGGTGGATCCGCGCTATTCCGACACCGT ATCTTCACTTGCCGATCAGTGGATCCCGCTGTTGCCGACCACGGACAATGCGTTGATGGACGCGATGATGTACGTCATTA TCAGCGAGAATCTCCACGATAAGACATTTATCGACACATATACTCTCGGTTTTGATGAAAACTCCATGCCGGAAGGCGTA CCAGCCAACGAATCGTTGGTTGCCTACCTTTTTGGCGCAAAAGATGGGATACACAAAACGCCGGAATGGGCAGAAAAAAT TACCCACGTTCCAGCACAATCCATTCGTCAACTGGCACGCGATTACGCCACTACAAAACCCGCAGCGTTGATTCAGGGAT GGGGGCCACAGCGACATATTTGCGGCGAACGCACCGCCCGAGGTTCAACTTTACTGGCCTCGATTACCGGTAACGTCGGC ATCAAAGGTGGCTGGGCGGCAGGTTACGGCGGTAGTTCTAATCGTAAATTCTGCGTTGGACCAGATATGCCAGAAAATCC GGTACAAGCGAAAATCTCGATTATGAACTGGATGCAGGCGGCGGATGATGCTTCTAAAGTTACGCCGCAAGATGGGCTTA AAGGTGTCGATAAACTCGACAGTAATATCCGCCTGCTGTTCTCACTGGCAGGTAATTATCTGGCGAACCAGAACCCGGAC GTCCACCAGGCCGCGAAGCTCCTTGAAGACGAATCTAAAATAGAATTCATCGTACTCAGCGATCTGTTCATGACTCCGAG CGCGAAATATGCCGATGTGTTGCTGCCGGAAACCAGCTTTATGGAACGCTGGAATATCGGCGAAACATGGGGAACTGCGA GCTATCTTATTCTGTCAGAAAAACCGATTGAGCCGGATTTTGAACGTCGCACCGATTATGACTGGTTGCGTGACGTGGCG AAAAAACTGGGTGTCGAAGCCGAGTTCAGTCAAGGACGTGATGAGAAGCAATGGATCGAGCATATCTGGGAGCAAACTCG TCTGGCGATGCCGGATGAAAATTTGCCGGACTTCGCAACCCTGCAAAAAACACGTCGACATCTTTTCAAAAGCGCGCCGC ACATCGCTTTCGAAGCAAATATTCGCGATCCGCAGAATAATCCTTTCCCGACGCCTTCCGGCAAAATTGAGATCTTCTCT AAGCGTCTTTTTGATATGCAAGATCCAGAAATTCCCGCGCTTTCGCACTATGTCCCTGCCTTTGAAGGGCCAGAAGATAA ACTGACGGCGAAATACCCGTTGCAGCTCATCACCTGGAAAGGGAAAAACCGTGCTAATTCCACCCAGTATGCTAACCCGT GGCTGCAAGAAGTTCAGACGCAAAAACTCTGGCTGAATCCGCAAGATGCAAAACAGCGCGGGATTAGCGAAGGAGATAGC GTAAAAATTTATAACGATCGTGGTGTGAGCATTATCCCGGTGGAAATAACCCCCCGTATCATCCCTGGCGTAGTTGCTAT GCAGGCGGGGGCATGGTGGCAACCGGATGCACAAGGTATCGATCGCGGAGGCTGTGCCAATGTACTGAGTTCGACCCGCA TTACGGCGCTGGCGAAAGGGAATTCGCATCAAACAATGCTGGTGGAGGTTGAGAAAGCATGA
Upstream 100 bases:
>100_bases TAATCTCACGTTTTTTTAAACGACTAATTATTTGATTGTTATCAGCATTGTTCTCGAATAAATACGTGAATATTTATTTT TTCATTTTCGGGAACGCAAG
Downstream 100 bases:
>100_bases GCCAATTTAAAGAATTTGCATCTGTCAGCGACAAACAATTAGGGTTCTTTATTGACTCTTCGCGTTGTTCGGGCTGTAAA GCGTGTCAGGTGGCCTGTAA
Product: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
Products: Reduced form of N-Oxide compounds [C]
Alternate protein names: DMSO reductase [H]
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MDTPDEKERITFPQVSRRSFLQATSALITLPFISSTAKAQSPDASPEVTAPVADKVVPTCSTFDCGGKCDIRAHMRDGVV TQITTLPDNELDPQMPIMRACVRGRGYRKFVYHPDRLKYPMKRVGKRGEGKFERISWDEATTLIADNLKRITQQYGPASR YVHVGTAVSGGTFSGDAMARRLLNLTGGYLEYYHSVSLGNTAAATPYTYGVAASGNSMDTLLDTKLVILWGHNPTETIFG HTNYYFQKMKQNGTRFIVVDPRYSDTVSSLADQWIPLLPTTDNALMDAMMYVIISENLHDKTFIDTYTLGFDENSMPEGV PANESLVAYLFGAKDGIHKTPEWAEKITHVPAQSIRQLARDYATTKPAALIQGWGPQRHICGERTARGSTLLASITGNVG IKGGWAAGYGGSSNRKFCVGPDMPENPVQAKISIMNWMQAADDASKVTPQDGLKGVDKLDSNIRLLFSLAGNYLANQNPD VHQAAKLLEDESKIEFIVLSDLFMTPSAKYADVLLPETSFMERWNIGETWGTASYLILSEKPIEPDFERRTDYDWLRDVA KKLGVEAEFSQGRDEKQWIEHIWEQTRLAMPDENLPDFATLQKTRRHLFKSAPHIAFEANIRDPQNNPFPTPSGKIEIFS KRLFDMQDPEIPALSHYVPAFEGPEDKLTAKYPLQLITWKGKNRANSTQYANPWLQEVQTQKLWLNPQDAKQRGISEGDS VKIYNDRGVSIIPVEITPRIIPGVVAMQAGAWWQPDAQGIDRGGCANVLSSTRITALAKGNSHQTMLVEVEKA
Sequences:
>Translated_793_residues MDTPDEKERITFPQVSRRSFLQATSALITLPFISSTAKAQSPDASPEVTAPVADKVVPTCSTFDCGGKCDIRAHMRDGVV TQITTLPDNELDPQMPIMRACVRGRGYRKFVYHPDRLKYPMKRVGKRGEGKFERISWDEATTLIADNLKRITQQYGPASR YVHVGTAVSGGTFSGDAMARRLLNLTGGYLEYYHSVSLGNTAAATPYTYGVAASGNSMDTLLDTKLVILWGHNPTETIFG HTNYYFQKMKQNGTRFIVVDPRYSDTVSSLADQWIPLLPTTDNALMDAMMYVIISENLHDKTFIDTYTLGFDENSMPEGV PANESLVAYLFGAKDGIHKTPEWAEKITHVPAQSIRQLARDYATTKPAALIQGWGPQRHICGERTARGSTLLASITGNVG IKGGWAAGYGGSSNRKFCVGPDMPENPVQAKISIMNWMQAADDASKVTPQDGLKGVDKLDSNIRLLFSLAGNYLANQNPD VHQAAKLLEDESKIEFIVLSDLFMTPSAKYADVLLPETSFMERWNIGETWGTASYLILSEKPIEPDFERRTDYDWLRDVA KKLGVEAEFSQGRDEKQWIEHIWEQTRLAMPDENLPDFATLQKTRRHLFKSAPHIAFEANIRDPQNNPFPTPSGKIEIFS KRLFDMQDPEIPALSHYVPAFEGPEDKLTAKYPLQLITWKGKNRANSTQYANPWLQEVQTQKLWLNPQDAKQRGISEGDS VKIYNDRGVSIIPVEITPRIIPGVVAMQAGAWWQPDAQGIDRGGCANVLSSTRITALAKGNSHQTMLVEVEKA >Mature_793_residues MDTPDEKERITFPQVSRRSFLQATSALITLPFISSTAKAQSPDASPEVTAPVADKVVPTCSTFDCGGKCDIRAHMRDGVV TQITTLPDNELDPQMPIMRACVRGRGYRKFVYHPDRLKYPMKRVGKRGEGKFERISWDEATTLIADNLKRITQQYGPASR YVHVGTAVSGGTFSGDAMARRLLNLTGGYLEYYHSVSLGNTAAATPYTYGVAASGNSMDTLLDTKLVILWGHNPTETIFG HTNYYFQKMKQNGTRFIVVDPRYSDTVSSLADQWIPLLPTTDNALMDAMMYVIISENLHDKTFIDTYTLGFDENSMPEGV PANESLVAYLFGAKDGIHKTPEWAEKITHVPAQSIRQLARDYATTKPAALIQGWGPQRHICGERTARGSTLLASITGNVG IKGGWAAGYGGSSNRKFCVGPDMPENPVQAKISIMNWMQAADDASKVTPQDGLKGVDKLDSNIRLLFSLAGNYLANQNPD VHQAAKLLEDESKIEFIVLSDLFMTPSAKYADVLLPETSFMERWNIGETWGTASYLILSEKPIEPDFERRTDYDWLRDVA KKLGVEAEFSQGRDEKQWIEHIWEQTRLAMPDENLPDFATLQKTRRHLFKSAPHIAFEANIRDPQNNPFPTPSGKIEIFS KRLFDMQDPEIPALSHYVPAFEGPEDKLTAKYPLQLITWKGKNRANSTQYANPWLQEVQTQKLWLNPQDAKQRGISEGDS VKIYNDRGVSIIPVEITPRIIPGVVAMQAGAWWQPDAQGIDRGGCANVLSSTRITALAKGNSHQTMLVEVEKA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds. Allows E.coli to grow anaerobically on Me(2)SO as respiratory oxidant [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081797, Length=815, Percent_Identity=43.1901840490798, Blast_Score=641, Evalue=0.0, Organism=Escherichia coli, GI171474008, Length=809, Percent_Identity=42.7688504326329, Blast_Score=612, Evalue=1e-176, Organism=Escherichia coli, GI1787870, Length=813, Percent_Identity=39.9753997539975, Blast_Score=573, Evalue=1e-164, Organism=Escherichia coli, GI145693196, Length=741, Percent_Identity=29.4197031039136, Blast_Score=265, Evalue=1e-71, Organism=Escherichia coli, GI1787231, Length=790, Percent_Identity=27.8481012658228, Blast_Score=249, Evalue=7e-67, Organism=Escherichia coli, GI87081994, Length=737, Percent_Identity=29.4436906377205, Blast_Score=233, Evalue=3e-62, Organism=Escherichia coli, GI3868721, Length=721, Percent_Identity=26.0748959778086, Blast_Score=173, Evalue=5e-44, Organism=Escherichia coli, GI3868720, Length=459, Percent_Identity=23.7472766884532, Blast_Score=93, Evalue=6e-20, Organism=Escherichia coli, GI1787741, Length=281, Percent_Identity=27.7580071174377, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI3868719, Length=457, Percent_Identity=22.9759299781182, Blast_Score=88, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011888 - InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 88323; Mature: 88323
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTPDEKERITFPQVSRRSFLQATSALITLPFISSTAKAQSPDASPEVTAPVADKVVPTC CCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCC STFDCGGKCDIRAHMRDGVVTQITTLPDNELDPQMPIMRACVRGRGYRKFVYHPDRLKYP CCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHCCH MKRVGKRGEGKFERISWDEATTLIADNLKRITQQYGPASRYVHVGTAVSGGTFSGDAMAR HHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHH RLLNLTGGYLEYYHSVSLGNTAAATPYTYGVAASGNSMDTLLDTKLVILWGHNPTETIFG HHHHHCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHEECCEEEEEECCCCCCCEEC HTNYYFQKMKQNGTRFIVVDPRYSDTVSSLADQWIPLLPTTDNALMDAMMYVIISENLHD CHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHCCCCCC KTFIDTYTLGFDENSMPEGVPANESLVAYLFGAKDGIHKTPEWAEKITHVPAQSIRQLAR CEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHH DYATTKPAALIQGWGPQRHICGERTARGSTLLASITGNVGIKGGWAAGYGGSSNRKFCVG HHCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCEEEEC PDMPENPVQAKISIMNWMQAADDASKVTPQDGLKGVDKLDSNIRLLFSLAGNYLANQNPD CCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHHCCCHHHHCCCCEEHHHHHCCHHCCCCCC VHQAAKLLEDESKIEFIVLSDLFMTPSAKYADVLLPETSFMERWNIGETWGTASYLILSE HHHHHHHHCCCCCEEEEEEECHHCCCCCCCCEEECCCHHHHHHCCCCCCCCCEEEEEEEC KPIEPDFERRTDYDWLRDVAKKLGVEAEFSQGRDEKQWIEHIWEQTRLAMPDENLPDFAT CCCCCCHHHCCCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHEECCCCCCCCCHHH LQKTRRHLFKSAPHIAFEANIRDPQNNPFPTPSGKIEIFSKRLFDMQDPEIPALSHYVPA HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCHHHCCCC FEGPEDKLTAKYPLQLITWKGKNRANSTQYANPWLQEVQTQKLWLNPQDAKQRGISEGDS CCCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHCCCCCCCC VKIYNDRGVSIIPVEITPRIIPGVVAMQAGAWWQPDAQGIDRGGCANVLSSTRITALAKG EEEECCCCCEEEEEEECCCHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECC NSHQTMLVEVEKA CCCCEEEEEEECC >Mature Secondary Structure MDTPDEKERITFPQVSRRSFLQATSALITLPFISSTAKAQSPDASPEVTAPVADKVVPTC CCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCC STFDCGGKCDIRAHMRDGVVTQITTLPDNELDPQMPIMRACVRGRGYRKFVYHPDRLKYP CCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHCCH MKRVGKRGEGKFERISWDEATTLIADNLKRITQQYGPASRYVHVGTAVSGGTFSGDAMAR HHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHH RLLNLTGGYLEYYHSVSLGNTAAATPYTYGVAASGNSMDTLLDTKLVILWGHNPTETIFG HHHHHCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHEECCEEEEEECCCCCCCEEC HTNYYFQKMKQNGTRFIVVDPRYSDTVSSLADQWIPLLPTTDNALMDAMMYVIISENLHD CHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHCCCCCC KTFIDTYTLGFDENSMPEGVPANESLVAYLFGAKDGIHKTPEWAEKITHVPAQSIRQLAR CEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHH DYATTKPAALIQGWGPQRHICGERTARGSTLLASITGNVGIKGGWAAGYGGSSNRKFCVG HHCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCEEEEC PDMPENPVQAKISIMNWMQAADDASKVTPQDGLKGVDKLDSNIRLLFSLAGNYLANQNPD CCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHHCCCHHHHCCCCEEHHHHHCCHHCCCCCC VHQAAKLLEDESKIEFIVLSDLFMTPSAKYADVLLPETSFMERWNIGETWGTASYLILSE HHHHHHHHCCCCCEEEEEEECHHCCCCCCCCEEECCCHHHHHHCCCCCCCCCEEEEEEEC KPIEPDFERRTDYDWLRDVAKKLGVEAEFSQGRDEKQWIEHIWEQTRLAMPDENLPDFAT CCCCCCHHHCCCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHEECCCCCCCCCHHH LQKTRRHLFKSAPHIAFEANIRDPQNNPFPTPSGKIEIFSKRLFDMQDPEIPALSHYVPA HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCHHHCCCC FEGPEDKLTAKYPLQLITWKGKNRANSTQYANPWLQEVQTQKLWLNPQDAKQRGISEGDS CCCCCCCEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHCCCCCCCC VKIYNDRGVSIIPVEITPRIIPGVVAMQAGAWWQPDAQGIDRGGCANVLSSTRITALAKG EEEECCCCCEEEEEEECCCHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECC NSHQTMLVEVEKA CCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: Fe; Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3062312; 8905232; 9278503; 2170332; 8125918; 10801884 [H]