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The map label for this gene is nlpD [H]

Identifier: 209695925

GI number: 209695925

Start: 2687197

End: 2688189

Strand: Reverse

Name: nlpD [H]

Synonym: VSAL_I2507

Alternate gene names: 209695925

Gene position: 2688189-2687197 (Counterclockwise)

Preceding gene: 209695926

Following gene: 209695924

Centisome position: 80.84

GC content: 41.39

Gene sequence:

>993_bases
ATGGATAAAATAAAACAATACTTCTCTTTCTCTTACTTGGGTGTGATAGCTCTTAGTTTATTGCTTGTTGGCTGTTCATT
GGGGCCACATCGTCCTGCGCCAGTATCAAGCGTTAATAGTAAGGCATCTTCTTATGGTGGCACTGAGCGTGGCAGCTATC
GAGGAAGTTACTACAAGGTTGAAAGCGGGGATACGTTATATTTTATTTCATATGTAACGAATAAAGATGTTAAAGAGCTT
ATTGCATATAACGAACTTAAAGCACCTTATGTGATCCAGCCAGGACAAAAAATAAAATTATGGGGCCCTCGATATATTGC
TCCTGCGTACGGTGATGATGGCCATTCCGTTATTAAAGAGAATGGTACCCCAAGGTCTACTGCAACAGCGGTTGCCGTTG
TTCCTGTTGCTACGAATAAAGCACCGAGTACGGCAAAACCCGTTACGTCCGCTAGCACAAAAACACAACCTGTTCAAAAA
CAAAGCACAAAAAAGGTTGAAAAGGCGAAATCGAAGGAGTATGTTGAATCTAACAAATCGATAACATCTTCTAAGCCGAA
GCCGGTTGTTAAGCCAAAACCGAAGCCAACACCGAAACCAAAACCAGTAGAAAAAAAATCGGAGAAGGTAGATTCGTGGT
TATGGCCAACTAAAGGAAGAATCATTGCTAAGTTTTCAACAGGAGACCAAGGAAATAAAGGGATAGATATCGCAGGTCAA
CGTGGCCAAGAGATCATCTCAACCGCAAAAGGAACCGTGGTTTATGCAGGCAATGCATTAAGAGGTTATGGCAACCTGAT
AATTATTAAACATAATGACGATTACTTAAGTGCCTACGCCCATAATGAATCATTGTTTGTGAAAGAAGGTCAACACATCA
ATGCGGGACAAAAAATCGCATCAATGGGTAGCTCAAGTACGAGCAGCGTTCGTTTGCATTTTGAGATCCGTTTTAGAGGG
AAATCGGTAAATCCACAACGGTATTTACCGTAA

Upstream 100 bases:

>100_bases
ATTGCTCCGAATTACCCGTCATGGAGATGAATTCCACTCTGAAGTGATCGAAGAGGTGCGGTTTGTGCCTTTAGTTTCAG
GGGACTTAGCATAAGTGAAT

Downstream 100 bases:

>100_bases
CAGGGATGACATAGCTGAGTTGTAATGTCTTGCTGGCTCGCCATAGGGAGGCGCTATGAGTAAAAGCAATGCAGTAACTA
AAGTTGAAGAATTTGATTTA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MDKIKQYFSFSYLGVIALSLLLVGCSLGPHRPAPVSSVNSKASSYGGTERGSYRGSYYKVESGDTLYFISYVTNKDVKEL
IAYNELKAPYVIQPGQKIKLWGPRYIAPAYGDDGHSVIKENGTPRSTATAVAVVPVATNKAPSTAKPVTSASTKTQPVQK
QSTKKVEKAKSKEYVESNKSITSSKPKPVVKPKPKPTPKPKPVEKKSEKVDSWLWPTKGRIIAKFSTGDQGNKGIDIAGQ
RGQEIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESLFVKEGQHINAGQKIASMGSSSTSSVRLHFEIRFRG
KSVNPQRYLP

Sequences:

>Translated_330_residues
MDKIKQYFSFSYLGVIALSLLLVGCSLGPHRPAPVSSVNSKASSYGGTERGSYRGSYYKVESGDTLYFISYVTNKDVKEL
IAYNELKAPYVIQPGQKIKLWGPRYIAPAYGDDGHSVIKENGTPRSTATAVAVVPVATNKAPSTAKPVTSASTKTQPVQK
QSTKKVEKAKSKEYVESNKSITSSKPKPVVKPKPKPTPKPKPVEKKSEKVDSWLWPTKGRIIAKFSTGDQGNKGIDIAGQ
RGQEIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESLFVKEGQHINAGQKIASMGSSSTSSVRLHFEIRFRG
KSVNPQRYLP
>Mature_330_residues
MDKIKQYFSFSYLGVIALSLLLVGCSLGPHRPAPVSSVNSKASSYGGTERGSYRGSYYKVESGDTLYFISYVTNKDVKEL
IAYNELKAPYVIQPGQKIKLWGPRYIAPAYGDDGHSVIKENGTPRSTATAVAVVPVATNKAPSTAKPVTSASTKTQPVQK
QSTKKVEKAKSKEYVESNKSITSSKPKPVVKPKPKPTPKPKPVEKKSEKVDSWLWPTKGRIIAKFSTGDQGNKGIDIAGQ
RGQEIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESLFVKEGQHINAGQKIASMGSSSTSSVRLHFEIRFRG
KSVNPQRYLP

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=286, Percent_Identity=44.0559440559441, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI87082174, Length=166, Percent_Identity=47.5903614457831, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=36.6666666666667, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 35957; Mature: 35957

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIKQYFSFSYLGVIALSLLLVGCSLGPHRPAPVSSVNSKASSYGGTERGSYRGSYYKV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHCCCCCCCCCCCCEEEE
ESGDTLYFISYVTNKDVKELIAYNELKAPYVIQPGQKIKLWGPRYIAPAYGDDGHSVIKE
CCCCEEEEEEEECCCHHHHHHHHHHCCCCEEECCCCEEEEECCEEECCCCCCCCHHHHHC
NGTPRSTATAVAVVPVATNKAPSTAKPVTSASTKTQPVQKQSTKKVEKAKSKEYVESNKS
CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
ITSSKPKPVVKPKPKPTPKPKPVEKKSEKVDSWLWPTKGRIIAKFSTGDQGNKGIDIAGQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCC
RGQEIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESLFVKEGQHINAGQKIA
CCHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCHHHH
SMGSSSTSSVRLHFEIRFRGKSVNPQRYLP
HCCCCCCCEEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MDKIKQYFSFSYLGVIALSLLLVGCSLGPHRPAPVSSVNSKASSYGGTERGSYRGSYYKV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHCCCCCCCCCCCCEEEE
ESGDTLYFISYVTNKDVKELIAYNELKAPYVIQPGQKIKLWGPRYIAPAYGDDGHSVIKE
CCCCEEEEEEEECCCHHHHHHHHHHCCCCEEECCCCEEEEECCEEECCCCCCCCHHHHHC
NGTPRSTATAVAVVPVATNKAPSTAKPVTSASTKTQPVQKQSTKKVEKAKSKEYVESNKS
CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
ITSSKPKPVVKPKPKPTPKPKPVEKKSEKVDSWLWPTKGRIIAKFSTGDQGNKGIDIAGQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCC
RGQEIISTAKGTVVYAGNALRGYGNLIIIKHNDDYLSAYAHNESLFVKEGQHINAGQKIA
CCHHHHHHCCCEEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCHHHH
SMGSSSTSSVRLHFEIRFRGKSVNPQRYLP
HCCCCCCCEEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]