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The map label for this gene is yeaM [H]

Identifier: 209695526

GI number: 209695526

Start: 2230843

End: 2231649

Strand: Direct

Name: yeaM [H]

Synonym: VSAL_I2080

Alternate gene names: 209695526

Gene position: 2230843-2231649 (Clockwise)

Preceding gene: 209695521

Following gene: 209695528

Centisome position: 67.09

GC content: 36.68

Gene sequence:

>807_bases
ATGATAAGTAACCAGCAGCTACCTGCTAATGAAATGATGAAGAACGACCCACTATTTCCTGCGTTGGCTAAAGTAATAGA
AATGCCTAAAGGCTACGTTGACTCGCTACATCATCACACATGGCATCAAGTAATATTTCCGATCAAAGGGTTACTCCAAA
CTCAAGTTGGATCTTATCAATATTTACTTCCTCATACCTCTGCGCTATTTGTTCCAGCAACGTTAGCACATGAATCAATC
GCTTTAACAAACACCACTTTCATTGGTATATATATTAACCCTGCGTATTGTTTTAAGTCTGAAGAACAGGTTCGAACCAT
ATCTTTAACTCCATTTATCAAGGAGTTAATACAAGAAATCAGAAGAAAATGTTTGCAAGTAGAAAGTCAAACGGCGTTAT
TAGGCTTATTACAAGTACTGCATGACCAAATGATGCATAACGACGTAATAACTTTTCAGCTACTACTCCCTAAAGATAGA
CGTTTAAAGCAAATATTTGACAAGTTAACTGAGACACCAGCCTTAGATTGGCCTTTAAAGATATGGGGAAACGAAGTGGG
AGCATCAGAACGAACGCTATCTAGACTTTTTGTTAAAGAGTTTAAAACCTCATTTCCACTCTGGCGTCAGCAATTGCGCT
TAATATATTCATTGTCACTATTGGATGAGGAAATAACAATACAAGCAATCGCTGACGAAATCGGATATCACAACGACTCA
TCATATATTAAAGCGTTTAAATCGTACTTCGACATGACACCACAACAATTTAGAGGCAATTCTAATCGAAAATACTATGA
ATTATAA

Upstream 100 bases:

>100_bases
TTCAACTCGGCAGGATAATGACACATTGACAACAAACCATCTCAAGCCGCCAATTATTATAAGCGTTGAAATAGGAACAA
GAACACAAGGATGAATAATA

Downstream 100 bases:

>100_bases
CTTATGGTAATACCGCATGAGAACTCAGCATGCAATTCATCTCAATAAGAAGCCTTCACTACAAGTACTTCTCTATTGGC
AATAACTGCAAAAATCGGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MISNQQLPANEMMKNDPLFPALAKVIEMPKGYVDSLHHHTWHQVIFPIKGLLQTQVGSYQYLLPHTSALFVPATLAHESI
ALTNTTFIGIYINPAYCFKSEEQVRTISLTPFIKELIQEIRRKCLQVESQTALLGLLQVLHDQMMHNDVITFQLLLPKDR
RLKQIFDKLTETPALDWPLKIWGNEVGASERTLSRLFVKEFKTSFPLWRQQLRLIYSLSLLDEEITIQAIADEIGYHNDS
SYIKAFKSYFDMTPQQFRGNSNRKYYEL

Sequences:

>Translated_268_residues
MISNQQLPANEMMKNDPLFPALAKVIEMPKGYVDSLHHHTWHQVIFPIKGLLQTQVGSYQYLLPHTSALFVPATLAHESI
ALTNTTFIGIYINPAYCFKSEEQVRTISLTPFIKELIQEIRRKCLQVESQTALLGLLQVLHDQMMHNDVITFQLLLPKDR
RLKQIFDKLTETPALDWPLKIWGNEVGASERTLSRLFVKEFKTSFPLWRQQLRLIYSLSLLDEEITIQAIADEIGYHNDS
SYIKAFKSYFDMTPQQFRGNSNRKYYEL
>Mature_268_residues
MISNQQLPANEMMKNDPLFPALAKVIEMPKGYVDSLHHHTWHQVIFPIKGLLQTQVGSYQYLLPHTSALFVPATLAHESI
ALTNTTFIGIYINPAYCFKSEEQVRTISLTPFIKELIQEIRRKCLQVESQTALLGLLQVLHDQMMHNDVITFQLLLPKDR
RLKQIFDKLTETPALDWPLKIWGNEVGASERTLSRLFVKEFKTSFPLWRQQLRLIYSLSLLDEEITIQAIADEIGYHNDS
SYIKAFKSYFDMTPQQFRGNSNRKYYEL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=25.6756756756757, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31148; Mature: 31148

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNQQLPANEMMKNDPLFPALAKVIEMPKGYVDSLHHHTWHQVIFPIKGLLQTQVGSYQ
CCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YLLPHTSALFVPATLAHESIALTNTTFIGIYINPAYCFKSEEQVRTISLTPFIKELIQEI
EECCCCCHHHHHHHHHHCCEEEECEEEEEEEECHHHHCCCCCCEEEEEECHHHHHHHHHH
RRKCLQVESQTALLGLLQVLHDQMMHNDVITFQLLLPKDRRLKQIFDKLTETPALDWPLK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCHH
IWGNEVGASERTLSRLFVKEFKTSFPLWRQQLRLIYSLSLLDEEITIQAIADEIGYHNDS
HCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCH
SYIKAFKSYFDMTPQQFRGNSNRKYYEL
HHHHHHHHHHCCCHHHHCCCCCCEECCC
>Mature Secondary Structure
MISNQQLPANEMMKNDPLFPALAKVIEMPKGYVDSLHHHTWHQVIFPIKGLLQTQVGSYQ
CCCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YLLPHTSALFVPATLAHESIALTNTTFIGIYINPAYCFKSEEQVRTISLTPFIKELIQEI
EECCCCCHHHHHHHHHHCCEEEECEEEEEEEECHHHHCCCCCCEEEEEECHHHHHHHHHH
RRKCLQVESQTALLGLLQVLHDQMMHNDVITFQLLLPKDRRLKQIFDKLTETPALDWPLK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCHH
IWGNEVGASERTLSRLFVKEFKTSFPLWRQQLRLIYSLSLLDEEITIQAIADEIGYHNDS
HCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCH
SYIKAFKSYFDMTPQQFRGNSNRKYYEL
HHHHHHHHHHCCCHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]