| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695489
Identifier: 209695489
GI number: 209695489
Start: 2185906
End: 2187207
Strand: Direct
Name: 209695489
Synonym: VSAL_I2040
Alternate gene names: NA
Gene position: 2185906-2187207 (Clockwise)
Preceding gene: 209695478
Following gene: 209695490
Centisome position: 65.74
GC content: 34.95
Gene sequence:
>1302_bases ATGAATGAACTAAGAAAGTATGCTGCCATTGGTGGTGCTATTGCGATTGTTGCTTGTTGGCCGTTTGCGACAGGAAAAAT TGGTGAAGCTATATTTAAAGATGGCATTGCCTCTTATGACAATTCTGTTATTAAAATAGAAAATATTTCTTATGACCGTG GTTATTTAAGTTCACAAGCTCAAAGCCGAGTGTATGTGACCGATAAAGGCTTAATTGCTGAATTAGAGCACGCGGGTTAT CCAAGTGAAATTATTGTTAATCATGAAATAGACCACGGTTTATTCTCTATTTCATCAACGTCAACGGTGACTGGAGAAGC GGCGTCTTCTGAATTTATAAAAGGACTGACGCTGACAACAAACAGCCAGTTGACTGGGAAGACAGATCTAGAATTAATAA GCCAAGATACTAATTTTGTTAATGCAGATTTAAAAGCTCAAGGCGTTGAGAAACTGTATTTAGCGGCAAGTAAAATTTCA GCGACCATTCATCCAGAAGGTGAATTTTCACTGCAATATAGTCTACCTAAAACTGAATTACGTTTAGAAAATCAATCAGA TATGCTGATAGATAATGTTTCTGGTAAAAGTGAAGGTAAATATCTAGATGATATTTTTATTGGTGATGCTAATGTGGCTA TCGATAAAATGACGATCAATGATATTGAAAGTAATATTCATAATGTCGTGAATAATGTGACTTATAGTAGTTCAAATGAA TTAGCTGAAGTAAAAGATCTTCCTGCTGATAATTCATTAAGTTCTACCAATATTCTAAAATTAGGTGAAGTAACGACTGA TGCTGGAACGCTAAAAAATGGCGTATTTAATATTAGTTTTGATGACTTGAATTACGATGCACTGATTAAATTAGTTCCAT TATTACAAGATCAAGAACTCACACCTGAAAAAATTCAACAATTGATGCTTTCGTTTGATTTACTTGCTGCAAAAGGCTTC AGCATCAATATTAATGAATTTAGTGCTGATGTGTTAGGCAGTAAGGTTGAAAGTAAGGTATTACTAAATTTACCTGCTGG TACAGCAAGAGCATCGCAAAATGCGGATCAATTGGTTCAAACACTAAAAGGCAATGCAGAGTTAGTTATCGCTAAGAAAT TGGTTGATGATACACCTGAACTGCGTATGCAAATGGATGAATTGTTGATTAACGAATTTGCAGTTGAAGAGGGTGATAAT TACCGTCTGGCGGCAACCATTGCAGATGGTCAAATTGAGCTATTAAATGGTCAAAAAATGCCATTGTTTATGCTTCTTGG TTTGTTAAGTTATTTACGTTAA
Upstream 100 bases:
>100_bases TAATAATTTTTAATGCAGTAAGAAATTGGATTAAATATGACTGTATTGCGTTCGATGAGTTAGGTAAACTGGTTGAAATC GTTAAAAAATGGATAATTAA
Downstream 100 bases:
>100_bases TCGTCATTAATTGAAAGACACAATAGCTCACTTCGGTGGGCTATTTTTTTATCGCTATTTAATTATGGCGGTTATTTAGT GAATTAGATCACTTTCTGAT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MNELRKYAAIGGAIAIVACWPFATGKIGEAIFKDGIASYDNSVIKIENISYDRGYLSSQAQSRVYVTDKGLIAELEHAGY PSEIIVNHEIDHGLFSISSTSTVTGEAASSEFIKGLTLTTNSQLTGKTDLELISQDTNFVNADLKAQGVEKLYLAASKIS ATIHPEGEFSLQYSLPKTELRLENQSDMLIDNVSGKSEGKYLDDIFIGDANVAIDKMTINDIESNIHNVVNNVTYSSSNE LAEVKDLPADNSLSSTNILKLGEVTTDAGTLKNGVFNISFDDLNYDALIKLVPLLQDQELTPEKIQQLMLSFDLLAAKGF SININEFSADVLGSKVESKVLLNLPAGTARASQNADQLVQTLKGNAELVIAKKLVDDTPELRMQMDELLINEFAVEEGDN YRLAATIADGQIELLNGQKMPLFMLLGLLSYLR
Sequences:
>Translated_433_residues MNELRKYAAIGGAIAIVACWPFATGKIGEAIFKDGIASYDNSVIKIENISYDRGYLSSQAQSRVYVTDKGLIAELEHAGY PSEIIVNHEIDHGLFSISSTSTVTGEAASSEFIKGLTLTTNSQLTGKTDLELISQDTNFVNADLKAQGVEKLYLAASKIS ATIHPEGEFSLQYSLPKTELRLENQSDMLIDNVSGKSEGKYLDDIFIGDANVAIDKMTINDIESNIHNVVNNVTYSSSNE LAEVKDLPADNSLSSTNILKLGEVTTDAGTLKNGVFNISFDDLNYDALIKLVPLLQDQELTPEKIQQLMLSFDLLAAKGF SININEFSADVLGSKVESKVLLNLPAGTARASQNADQLVQTLKGNAELVIAKKLVDDTPELRMQMDELLINEFAVEEGDN YRLAATIADGQIELLNGQKMPLFMLLGLLSYLR >Mature_433_residues MNELRKYAAIGGAIAIVACWPFATGKIGEAIFKDGIASYDNSVIKIENISYDRGYLSSQAQSRVYVTDKGLIAELEHAGY PSEIIVNHEIDHGLFSISSTSTVTGEAASSEFIKGLTLTTNSQLTGKTDLELISQDTNFVNADLKAQGVEKLYLAASKIS ATIHPEGEFSLQYSLPKTELRLENQSDMLIDNVSGKSEGKYLDDIFIGDANVAIDKMTINDIESNIHNVVNNVTYSSSNE LAEVKDLPADNSLSSTNILKLGEVTTDAGTLKNGVFNISFDDLNYDALIKLVPLLQDQELTPEKIQQLMLSFDLLAAKGF SININEFSADVLGSKVESKVLLNLPAGTARASQNADQLVQTLKGNAELVIAKKLVDDTPELRMQMDELLINEFAVEEGDN YRLAATIADGQIELLNGQKMPLFMLLGLLSYLR
Specific function: Unknown
COG id: COG5339
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47160; Mature: 47160
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNELRKYAAIGGAIAIVACWPFATGKIGEAIFKDGIASYDNSVIKIENISYDRGYLSSQA CCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCHHHCCCCEEEEEECCCCCCCCCCCC QSRVYVTDKGLIAELEHAGYPSEIIVNHEIDHGLFSISSTSTVTGEAASSEFIKGLTLTT CCEEEEECCCCCHHHHHCCCCCEEEEEEECCCCEEEECCCCEECCCCHHHHHHCCEEEEC NSQLTGKTDLELISQDTNFVNADLKAQGVEKLYLAASKISATIHPEGEFSLQYSLPKTEL CCCCCCCCCHHEEECCCCEEECCHHHCCHHHHHEEHHHEEEEECCCCCEEEEECCCCHHE RLENQSDMLIDNVSGKSEGKYLDDIFIGDANVAIDKMTINDIESNIHNVVNNVTYSSSNE EECCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCC LAEVKDLPADNSLSSTNILKLGEVTTDAGTLKNGVFNISFDDLNYDALIKLVPLLQDQEL HHHHHCCCCCCCCCCCCEEEECCEECCCCHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC TPEKIQQLMLSFDLLAAKGFSININEFSADVLGSKVESKVLLNLPAGTARASQNADQLVQ CHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHH TLKGNAELVIAKKLVDDTPELRMQMDELLINEFAVEEGDNYRLAATIADGQIELLNGQKM HHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEECCCCC PLFMLLGLLSYLR HHHHHHHHHHHHC >Mature Secondary Structure MNELRKYAAIGGAIAIVACWPFATGKIGEAIFKDGIASYDNSVIKIENISYDRGYLSSQA CCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHCCHHHCCCCEEEEEECCCCCCCCCCCC QSRVYVTDKGLIAELEHAGYPSEIIVNHEIDHGLFSISSTSTVTGEAASSEFIKGLTLTT CCEEEEECCCCCHHHHHCCCCCEEEEEEECCCCEEEECCCCEECCCCHHHHHHCCEEEEC NSQLTGKTDLELISQDTNFVNADLKAQGVEKLYLAASKISATIHPEGEFSLQYSLPKTEL CCCCCCCCCHHEEECCCCEEECCHHHCCHHHHHEEHHHEEEEECCCCCEEEEECCCCHHE RLENQSDMLIDNVSGKSEGKYLDDIFIGDANVAIDKMTINDIESNIHNVVNNVTYSSSNE EECCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCC LAEVKDLPADNSLSSTNILKLGEVTTDAGTLKNGVFNISFDDLNYDALIKLVPLLQDQEL HHHHHCCCCCCCCCCCCEEEECCEECCCCHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC TPEKIQQLMLSFDLLAAKGFSININEFSADVLGSKVESKVLLNLPAGTARASQNADQLVQ CHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHH TLKGNAELVIAKKLVDDTPELRMQMDELLINEFAVEEGDNYRLAATIADGQIELLNGQKM HHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEECCCCC PLFMLLGLLSYLR HHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA