| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695471
Identifier: 209695471
GI number: 209695471
Start: 2162473
End: 2163162
Strand: Direct
Name: 209695471
Synonym: VSAL_I2020
Alternate gene names: NA
Gene position: 2162473-2163162 (Clockwise)
Preceding gene: 209695470
Following gene: 209695472
Centisome position: 65.03
GC content: 37.68
Gene sequence:
>690_bases ATGAGTAATGAGACAAACACAGTGCACTATTATCAAGAAATTCAAAAAGTAATTAATGAAGCTCTTACTGACTTACAAGA AAGTAAGGACAGTGGACGCTTACCGAAAAATCCGGTAAGTGCAAATCACTTTTTGATCCGATGGGTGACCACTGCGATTA AATCACAGCGTTTTTCTCGTTGTGTCGTCAAAGATTTGCAGACTTGGCAAAAAGAAGGCCGTACGAAAGGGACTGGAACT GAGCTTCCTGTTCGTTTTGAACATTATTCTCGCTTGTATCAAGCATTAGCGCCTATTGACACCGTGACTCCAATTACTAA ATCAGTAGTAATGGGGTGGTGTGAGTCATTAGAAGAAAAAGAATGGTGTGTAACGACAGATTTTGAAATTTTAGAAAAAG CGTCTTTGTTTTCAGATGGTGATCATTCGTTGATTATCTGTGCGACGCAATTAGCATCGTGTTTTGAAGGGGATGATGCT GAAAATCAACTGCTTGTGAAGCCGTTGACGTGTTATGTTCGTGGTAATCATCATGAGTTTGTTGAATCGGCTTTTGAGCA CGGTTTGATAGTACATAAGCGTTCTGACTATAAATCAAAAGTAAAATACCATGGTGAATATTTAATTTATCCAAATAACC ACGGTATTCAATTAGGTGAAACGCCATTTTCATTTAATGTGAAAAAATAA
Upstream 100 bases:
>100_bases AATGTTTCCTGCTGATTCTGCTTGGCCTATGGTGAGTTCCATGGCAGCATGTTCTATCTTATCTTTTGGTTGTTATTTTG TTTTTGGACGTAAAGCGTAA
Downstream 100 bases:
>100_bases CAGAATCGGTTACTTTCATTGTTCGATAAAAAGCGCAGATATTCTGCGCTTTTTTATTTTGTGGTTGTTTGTTTACTCTT CTTTTTCTGCTTTTTTACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MSNETNTVHYYQEIQKVINEALTDLQESKDSGRLPKNPVSANHFLIRWVTTAIKSQRFSRCVVKDLQTWQKEGRTKGTGT ELPVRFEHYSRLYQALAPIDTVTPITKSVVMGWCESLEEKEWCVTTDFEILEKASLFSDGDHSLIICATQLASCFEGDDA ENQLLVKPLTCYVRGNHHEFVESAFEHGLIVHKRSDYKSKVKYHGEYLIYPNNHGIQLGETPFSFNVKK
Sequences:
>Translated_229_residues MSNETNTVHYYQEIQKVINEALTDLQESKDSGRLPKNPVSANHFLIRWVTTAIKSQRFSRCVVKDLQTWQKEGRTKGTGT ELPVRFEHYSRLYQALAPIDTVTPITKSVVMGWCESLEEKEWCVTTDFEILEKASLFSDGDHSLIICATQLASCFEGDDA ENQLLVKPLTCYVRGNHHEFVESAFEHGLIVHKRSDYKSKVKYHGEYLIYPNNHGIQLGETPFSFNVKK >Mature_228_residues SNETNTVHYYQEIQKVINEALTDLQESKDSGRLPKNPVSANHFLIRWVTTAIKSQRFSRCVVKDLQTWQKEGRTKGTGTE LPVRFEHYSRLYQALAPIDTVTPITKSVVMGWCESLEEKEWCVTTDFEILEKASLFSDGDHSLIICATQLASCFEGDDAE NQLLVKPLTCYVRGNHHEFVESAFEHGLIVHKRSDYKSKVKYHGEYLIYPNNHGIQLGETPFSFNVKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26261; Mature: 26130
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNETNTVHYYQEIQKVINEALTDLQESKDSGRLPKNPVSANHFLIRWVTTAIKSQRFSR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH CVVKDLQTWQKEGRTKGTGTELPVRFEHYSRLYQALAPIDTVTPITKSVVMGWCESLEEK HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC EWCVTTDFEILEKASLFSDGDHSLIICATQLASCFEGDDAENQLLVKPLTCYVRGNHHEF CCEEECCHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEEEEEEECCHHHH VESAFEHGLIVHKRSDYKSKVKYHGEYLIYPNNHGIQLGETPFSFNVKK HHHHHHCCEEEEECCCHHHHHEECCCEEEEECCCCEEECCCCCEECCCC >Mature Secondary Structure SNETNTVHYYQEIQKVINEALTDLQESKDSGRLPKNPVSANHFLIRWVTTAIKSQRFSR CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH CVVKDLQTWQKEGRTKGTGTELPVRFEHYSRLYQALAPIDTVTPITKSVVMGWCESLEEK HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC EWCVTTDFEILEKASLFSDGDHSLIICATQLASCFEGDDAENQLLVKPLTCYVRGNHHEF CCEEECCHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCCCEEEEEEEEEEEECCHHHH VESAFEHGLIVHKRSDYKSKVKYHGEYLIYPNNHGIQLGETPFSFNVKK HHHHHHCCEEEEECCCHHHHHEECCCEEEEECCCCEEECCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA