| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695445
Identifier: 209695445
GI number: 209695445
Start: 2127761
End: 2129173
Strand: Direct
Name: 209695445
Synonym: VSAL_I1986
Alternate gene names: NA
Gene position: 2127761-2129173 (Clockwise)
Preceding gene: 209695444
Following gene: 209695446
Centisome position: 63.99
GC content: 36.8
Gene sequence:
>1413_bases ATGAAACAATATTTTAAGATGGCAATAATTGCTACGGCATTGTCTAGTGTGGTTGGTTGTCAAAGTACGAATAATACGGA GACTTCGGTAGCTGTAGAAAAAAACAGAGCCGTATCATCAGTATCAACATTTGATGTATTACAAAAACAATACACTTTAG ACAAAGCAACGTTTGATTCTGTTGAGCAGTTTAGACTCTACTCTGAGCCAACTTACAACATAATGACCGAATCATGGAAT GATGCTAAAGAGATTTATTTAGAGGTAGAAAAAGAACCAGGATTAATTAATGAAGAATATTCGATGTTTTCTTCTGGATC TTATGCCACTAAATACAGCGAATATATAACGAAAGCAGATGCAGAGCTTAGTAAGCTTAAAAGGTATAAAGAGCAAGCCG ATGTTGTTCTTTCAGACGCGATATCACAAATGGATTACATGACATCTATTGATGTAAATACTTATTATCCTGCTGAGTTT GCATCTCTAAATTCGCAATATAAAACGTTATTTATTACGGTGATTGAAGACGATATTGCAGAGGCTCAAACTGAGCAAGC TTCTTTTTTAACGAATGCAAAAGCGATTGAAATAGATACAACGTTAAAGATTTATGTTTATCCTCTTGAAAAAGAATTTA ATCAACTCTCTCAAAAAGGGTTTAAAACCATCGCGGCTATTAGTTACGGCCAAGCGAAAGCCGAATTAGACAAAACTCAG AAAGCAGTTCAAGCGAATAACCGCGATGAAGCGCTAATTAGCAGTGCTGTAAATCGTACTGTTTTTCAATTAGATCATCT TAAAAATATGGCGGCTGCAGTAAAATTACTGCAGGCGGTTAAAAATGGTCAATTTGAACAGCCAGTATTAGAGTTTGAAA ATAAATTATTATCAATATCTCAGGCGATTAACGGGAACGATTACCGTGATCAACCATTAAGAACTCAAACAACGTCTATT TTAGATTCGGTGCAGCAAATGCACGAAGCAAATAATACCGTTGTGTTAGAGAAAAAAATACAAGAACTCAATGCACAAAT TAAAAGTCAAGCGCTTACCATTGAGAACCAAACTGAAGACCGTTCTGGTGTGCAAAAACAAGTGTTAGTTCTAACGCAGC AATTAGAGCGTAACGATAATTTAATTAAAAATCTGAATGATGTGATTGCATCGTTTAAAGAGAAAGAACAAGCGACTGAA AAAGTGGCCGAAGAGAAGGTGGAGCTTCCTGTTGTTGAGTCTGAAAAAACGGCGATTATTGCCGATGAAGTGAAGGCGAA AAGTACGGAAGAGGTGGCAGTGGTTCCTGTCGTAACAAAGCCAAAAACTCAAGAAGCAGCAGTTAAAGCCGCTGTCGCTG TGAAAGCAGTAAATGAAGAGACAACGAATGAAGGCGTGATTGTTTCTGAATAA
Upstream 100 bases:
>100_bases TGAACTCATTGTAAATACTGATTTAATTGTTGTTATGTAGTAGGATTCGAAAAAAGTGCACACGCACTTTGTCTATTCAT ATAATAAAAATAGGTTCAGA
Downstream 100 bases:
>100_bases GTGGTTAAATAATCATTAGTCATTATAATTAAGCGTTCTAAACTACGGTCTAGAGCGCTTTTTTTATTTATTTTTTAAAG TTTCTGATACACTCCGGCTG
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDSVEQFRLYSEPTYNIMTESWN DAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKADAELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEF ASLNSQYKTLFITVIEDDIAEAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSISQAINGNDYRDQPLRTQTTSI LDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTEDRSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATE KVAEEKVELPVVESEKTAIIADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE
Sequences:
>Translated_470_residues MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDSVEQFRLYSEPTYNIMTESWN DAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKADAELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEF ASLNSQYKTLFITVIEDDIAEAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSISQAINGNDYRDQPLRTQTTSI LDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTEDRSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATE KVAEEKVELPVVESEKTAIIADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE >Mature_470_residues MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDSVEQFRLYSEPTYNIMTESWN DAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKADAELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEF ASLNSQYKTLFITVIEDDIAEAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSISQAINGNDYRDQPLRTQTTSI LDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTEDRSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATE KVAEEKVELPVVESEKTAIIADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52537; Mature: 52537
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDS CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH VEQFRLYSEPTYNIMTESWNDAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKAD HHHHHHCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHH AELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEFASLNSQYKTLFITVIEDDIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCCEEEEEEEECHHHH EAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ HHHHHHHHHHCCCEEEEEECEEEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSIS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH QAINGNDYRDQPLRTQTTSILDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTED HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCCCC RSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATEKVAEEKVELPVVESEKTAII HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEE ADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE EHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC >Mature Secondary Structure MKQYFKMAIIATALSSVVGCQSTNNTETSVAVEKNRAVSSVSTFDVLQKQYTLDKATFDS CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH VEQFRLYSEPTYNIMTESWNDAKEIYLEVEKEPGLINEEYSMFSSGSYATKYSEYITKAD HHHHHHCCCCCCCEECCCCCCCEEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHH AELSKLKRYKEQADVVLSDAISQMDYMTSIDVNTYYPAEFASLNSQYKTLFITVIEDDIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCCEEEEEEEECHHHH EAQTEQASFLTNAKAIEIDTTLKIYVYPLEKEFNQLSQKGFKTIAAISYGQAKAELDKTQ HHHHHHHHHHCCCEEEEEECEEEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KAVQANNRDEALISSAVNRTVFQLDHLKNMAAAVKLLQAVKNGQFEQPVLEFENKLLSIS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH QAINGNDYRDQPLRTQTTSILDSVQQMHEANNTVVLEKKIQELNAQIKSQALTIENQTED HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCCCC RSGVQKQVLVLTQQLERNDNLIKNLNDVIASFKEKEQATEKVAEEKVELPVVESEKTAII HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEE ADEVKAKSTEEVAVVPVVTKPKTQEAAVKAAVAVKAVNEETTNEGVIVSE EHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA