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The map label for this gene is yocR [H]

Identifier: 209695398

GI number: 209695398

Start: 2070168

End: 2071514

Strand: Direct

Name: yocR [H]

Synonym: VSAL_I1935

Alternate gene names: 209695398

Gene position: 2070168-2071514 (Clockwise)

Preceding gene: 209695396

Following gene: 209695403

Centisome position: 62.26

GC content: 39.35

Gene sequence:

>1347_bases
ATGGATAGTAATGCTTCAAGAGGTCAGTTTACCTCAAAATTAGGTTTTATTATGGCAGCTGCAGGTTCAGCTGTTGGTTT
AGGTAATGTATGGGGTTTTCCTACAAAAGCTGCCAGTAACGGTGGCGCTGCTTTTTTATTAATGTACCTTTTAATGGTTT
TCCTATTGGCTTTCCCTATGTTAGTCGCAGAGCTAACCATTGGTCGTCATGGGCAATCTAACCCTATTGCTTCTCTAAAG
AAAATTTGGACTAAAAATAAGCTCGCCGCTGGAGTGTTTGGTTTTATTGCCATGTTGGCCGCTTCTATGATTTTAAGTTT
TTATTCTATTCTTGCTGGTTGGTTAATGGGCTTTGCTGCTGCTCCTATTTTAGAAATCATAGGCCTACAAAGTGTTGCTG
ATTGGCTAGTGAATTTTGGTGACAGTCGTAATGTGGTATTAACGATTCTATTTTCTGTATTTACTATTTATGTTGTTCAG
AAAGGTGTTGCTGATGGTATTGAAAAGTGGTCAACACGTTTAATGCCAATGCTATTTATATTATTCGGGATCATGATTGC
TTATATCTTTACTCAAGATGGTGCAATGGAAGGCCTTAAAATGTATCTAGTGCCTGACTTCTCTCACATCAATAGTGGTT
TGTTAGTCGATGCTATGGGGCAAGCCTTTTTCTCTCTATCATTAGGTGTTGGCTCAATGATGGTATACGGTTCATATTTA
AAGAAAGATGTGAATATTCCTAAAACGGCAGCTCAAGTAGCGGCGATTGATACCAGTGTTGCTTTTGCCGCAGGTCTTCT
TATTCTTCCTGCGATGTTTGTTGCTAAAAATAATGGCGTTGAGATATTTAATGAAGCGGGTCAATTGATCAGTTCTGGTG
ACCTTGTCTTTGCTGTGTTACCTGCGATGTTTGAAACGATGGGGGGAATGGGTGTTGTTTTAGGTACGGCTTTCTTTGTA
CTCATGGTAATTGCTGCATTAACGTCTTCGATCTCACTGCTTGAAGTCCCTGTTTCTTGTGCGCAAGAAGAGTTAAAAAC
GGACAGAACAAAAGCAACGTGGCTTATTGGCGGAGCAATTCTTGTTCTAAGCTTATTTATTGTCTTTAATTTTGGCACAT
TGTTTGGATTGATTGCAGACATCTCTACGGTTTATATGCAACCGCTGCTAGGGGTTGTTTGGGCTATCATTGTTGGTTGG
ATTTGGAATCGTAATAAGGTATTAGAAGAGATCAAACAAGGTAACCCTGAGATTGCACAAGGACTATTCTGGAAAATTTG
GCCTTGGTATGTACGAGTAGTATGTCCTGTCGCTATTCTTGTTGTATTTATGGTTTCTATTCTTTAA

Upstream 100 bases:

>100_bases
TTAAACTGGTTTACTTACCACTATTCTAATAATTTTAATACATACGGTATGTAAAATATAATTTACAACCTGTAATTTTT
CAAGCACAGATGGAATAAAC

Downstream 100 bases:

>100_bases
ATATAAAAAGTAAAAGTAAAAACGCCGCATTTAAATAAATGCGGCGTTTTTTATGTCTTTATTATCTTTTAACAAGAACT
ATTGAGCTTAAATTATTCAA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MDSNASRGQFTSKLGFIMAAAGSAVGLGNVWGFPTKAASNGGAAFLLMYLLMVFLLAFPMLVAELTIGRHGQSNPIASLK
KIWTKNKLAAGVFGFIAMLAASMILSFYSILAGWLMGFAAAPILEIIGLQSVADWLVNFGDSRNVVLTILFSVFTIYVVQ
KGVADGIEKWSTRLMPMLFILFGIMIAYIFTQDGAMEGLKMYLVPDFSHINSGLLVDAMGQAFFSLSLGVGSMMVYGSYL
KKDVNIPKTAAQVAAIDTSVAFAAGLLILPAMFVAKNNGVEIFNEAGQLISSGDLVFAVLPAMFETMGGMGVVLGTAFFV
LMVIAALTSSISLLEVPVSCAQEELKTDRTKATWLIGGAILVLSLFIVFNFGTLFGLIADISTVYMQPLLGVVWAIIVGW
IWNRNKVLEEIKQGNPEIAQGLFWKIWPWYVRVVCPVAILVVFMVSIL

Sequences:

>Translated_448_residues
MDSNASRGQFTSKLGFIMAAAGSAVGLGNVWGFPTKAASNGGAAFLLMYLLMVFLLAFPMLVAELTIGRHGQSNPIASLK
KIWTKNKLAAGVFGFIAMLAASMILSFYSILAGWLMGFAAAPILEIIGLQSVADWLVNFGDSRNVVLTILFSVFTIYVVQ
KGVADGIEKWSTRLMPMLFILFGIMIAYIFTQDGAMEGLKMYLVPDFSHINSGLLVDAMGQAFFSLSLGVGSMMVYGSYL
KKDVNIPKTAAQVAAIDTSVAFAAGLLILPAMFVAKNNGVEIFNEAGQLISSGDLVFAVLPAMFETMGGMGVVLGTAFFV
LMVIAALTSSISLLEVPVSCAQEELKTDRTKATWLIGGAILVLSLFIVFNFGTLFGLIADISTVYMQPLLGVVWAIIVGW
IWNRNKVLEEIKQGNPEIAQGLFWKIWPWYVRVVCPVAILVVFMVSIL
>Mature_448_residues
MDSNASRGQFTSKLGFIMAAAGSAVGLGNVWGFPTKAASNGGAAFLLMYLLMVFLLAFPMLVAELTIGRHGQSNPIASLK
KIWTKNKLAAGVFGFIAMLAASMILSFYSILAGWLMGFAAAPILEIIGLQSVADWLVNFGDSRNVVLTILFSVFTIYVVQ
KGVADGIEKWSTRLMPMLFILFGIMIAYIFTQDGAMEGLKMYLVPDFSHINSGLLVDAMGQAFFSLSLGVGSMMVYGSYL
KKDVNIPKTAAQVAAIDTSVAFAAGLLILPAMFVAKNNGVEIFNEAGQLISSGDLVFAVLPAMFETMGGMGVVLGTAFFV
LMVIAALTSSISLLEVPVSCAQEELKTDRTKATWLIGGAILVLSLFIVFNFGTLFGLIADISTVYMQPLLGVVWAIIVGW
IWNRNKVLEEIKQGNPEIAQGLFWKIWPWYVRVVCPVAILVVFMVSIL

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507041, Length=503, Percent_Identity=24.2544731610338, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4507043, Length=505, Percent_Identity=23.3663366336634, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI21361581, Length=380, Percent_Identity=23.1578947368421, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI7657587, Length=465, Percent_Identity=23.6559139784946, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI134304856, Length=353, Percent_Identity=25.2124645892351, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI197276623, Length=331, Percent_Identity=24.773413897281, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI54607094, Length=331, Percent_Identity=24.773413897281, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI171184408, Length=469, Percent_Identity=22.3880597014925, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI171184406, Length=469, Percent_Identity=22.3880597014925, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI171184404, Length=469, Percent_Identity=22.3880597014925, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI33354281, Length=300, Percent_Identity=24.3333333333333, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI51468073, Length=298, Percent_Identity=23.489932885906, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI92859670, Length=107, Percent_Identity=40.1869158878505, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI289191353, Length=314, Percent_Identity=27.7070063694268, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI289191351, Length=314, Percent_Identity=27.7070063694268, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI4557046, Length=314, Percent_Identity=27.7070063694268, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI289191377, Length=311, Percent_Identity=27.6527331189711, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI58219014, Length=304, Percent_Identity=24.0131578947368, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI6005715, Length=167, Percent_Identity=26.3473053892216, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI21361693, Length=109, Percent_Identity=33.0275229357798, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI197276625, Length=110, Percent_Identity=32.7272727272727, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI67782317, Length=110, Percent_Identity=30.9090909090909, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI67782313, Length=110, Percent_Identity=30.9090909090909, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI67782315, Length=110, Percent_Identity=30.9090909090909, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17554804, Length=477, Percent_Identity=24.7379454926625, Blast_Score=99, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71995588, Length=502, Percent_Identity=21.9123505976096, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25146584, Length=134, Percent_Identity=29.8507462686567, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17535731, Length=114, Percent_Identity=30.7017543859649, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17555248, Length=112, Percent_Identity=33.0357142857143, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17542050, Length=113, Percent_Identity=30.9734513274336, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI212642127, Length=115, Percent_Identity=31.304347826087, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534083, Length=115, Percent_Identity=31.304347826087, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45550877, Length=396, Percent_Identity=27.5252525252525, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI45551183, Length=396, Percent_Identity=28.030303030303, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24762620, Length=500, Percent_Identity=24.8, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI17136952, Length=383, Percent_Identity=23.7597911227154, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281364394, Length=384, Percent_Identity=23.4375, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI28574704, Length=384, Percent_Identity=23.4375, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI17136950, Length=384, Percent_Identity=23.4375, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI28574702, Length=384, Percent_Identity=23.4375, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24654186, Length=296, Percent_Identity=29.0540540540541, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24661428, Length=507, Percent_Identity=22.6824457593688, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24652942, Length=477, Percent_Identity=20.335429769392, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI45551088, Length=477, Percent_Identity=20.335429769392, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24639514, Length=298, Percent_Identity=23.1543624161074, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639516, Length=298, Percent_Identity=23.1543624161074, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221329674, Length=298, Percent_Identity=23.1543624161074, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24655079, Length=300, Percent_Identity=23.3333333333333, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582567, Length=73, Percent_Identity=43.8356164383562, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48309; Mature: 48309

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]