| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is folE
Identifier: 209695396
GI number: 209695396
Start: 2067717
End: 2068370
Strand: Direct
Name: folE
Synonym: VSAL_I1933
Alternate gene names: 209695396
Gene position: 2067717-2068370 (Clockwise)
Preceding gene: 209695393
Following gene: 209695398
Centisome position: 62.18
GC content: 40.98
Gene sequence:
>654_bases ATGTCATCATTCAGTGAATCAGCCATTTTGGTGCGTGATGCTCTTGTTGCGCGTGGCCTTGAGACGCCAATGAAAGAAAA TGGAATTAGTCGTGAAGAGAAAAAAGAACGTATTGAAGAGCATATGCGTGAGATTTTATCTCTGCTTACTCTCGACCTTA GTGATGACAGCCTTGAAGAGACGCCTCATCGAATTGCTAAGATGTACGTTGATGAAATCTTTTCTGGGTTAGATTATGCG AATTTCCCTAAAATTACCGTCATTGAAAATAAAATGAACTGTGATGAAATGGTTCGAGTGAACGACATTACATTAACGAG TACGTGTGAACATCATTTAGTGACTATTGATGGAAAAGCCACCGTTGCTTATATTCCTCGTGAAAAGATCATTGGTCTGT CGAAGATTAATCGTATTGTTCGATTTTTTGCCCAGCGTCCTCAAGTTCAAGAGCGTATGACACAGCAAATATTAGTGGCA CTGCAAACATTACTTGGCAGTGATGATGTTGCGATCACAATGGAAGCGACACATTATTGTGTTAAGTCTCGTGGTGTCAT GGATGCGACGAGTAGCACAACGACAACTGCGCTTGGCGGGATTTTCAAACGTAATCCAGCGACAAGACATGAATTTTTAA GTGGCATTCGTTAA
Upstream 100 bases:
>100_bases GCTGAACATCTAATAGACCCATGAAAATCAGGGTGTATTTATTTTACAGAGCGGGTATCCTTAGCGCAGGATTTTTAAAT AGAATACTCTGGAGTATATG
Downstream 100 bases:
>100_bases TATTTACGGATGTTAAAAAAGCCCACGATAATTAAATTATCGTGGGCTTTTTAATTTATGCTTTGTTTTAAAGTAAGGGG CTAAACATAGAGAAGAAACG
Product: GTP cyclohydrolase I
Products: NA
Alternate protein names: GTP cyclohydrolase I; GTP-CH-I
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MSSFSESAILVRDALVARGLETPMKENGISREEKKERIEEHMREILSLLTLDLSDDSLEETPHRIAKMYVDEIFSGLDYA NFPKITVIENKMNCDEMVRVNDITLTSTCEHHLVTIDGKATVAYIPREKIIGLSKINRIVRFFAQRPQVQERMTQQILVA LQTLLGSDDVAITMEATHYCVKSRGVMDATSSTTTTALGGIFKRNPATRHEFLSGIR
Sequences:
>Translated_217_residues MSSFSESAILVRDALVARGLETPMKENGISREEKKERIEEHMREILSLLTLDLSDDSLEETPHRIAKMYVDEIFSGLDYA NFPKITVIENKMNCDEMVRVNDITLTSTCEHHLVTIDGKATVAYIPREKIIGLSKINRIVRFFAQRPQVQERMTQQILVA LQTLLGSDDVAITMEATHYCVKSRGVMDATSSTTTTALGGIFKRNPATRHEFLSGIR >Mature_216_residues SSFSESAILVRDALVARGLETPMKENGISREEKKERIEEHMREILSLLTLDLSDDSLEETPHRIAKMYVDEIFSGLDYAN FPKITVIENKMNCDEMVRVNDITLTSTCEHHLVTIDGKATVAYIPREKIIGLSKINRIVRFFAQRPQVQERMTQQILVAL QTLLGSDDVAITMEATHYCVKSRGVMDATSSTTTTALGGIFKRNPATRHEFLSGIR
Specific function: Tetrahydrofolate biosynthesis; first step. [C]
COG id: COG0302
COG function: function code H; GTP cyclohydrolase I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP cyclohydrolase I family
Homologues:
Organism=Homo sapiens, GI66932968, Length=180, Percent_Identity=41.1111111111111, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI4503949, Length=180, Percent_Identity=41.1111111111111, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI66932970, Length=155, Percent_Identity=38.0645161290323, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI66932972, Length=140, Percent_Identity=40, Blast_Score=89, Evalue=3e-18, Organism=Escherichia coli, GI1788476, Length=219, Percent_Identity=71.2328767123288, Blast_Score=314, Evalue=3e-87, Organism=Caenorhabditis elegans, GI17560486, Length=200, Percent_Identity=39, Blast_Score=132, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6321706, Length=181, Percent_Identity=42.5414364640884, Blast_Score=130, Evalue=2e-31, Organism=Drosophila melanogaster, GI24656796, Length=120, Percent_Identity=48.3333333333333, Blast_Score=112, Evalue=1e-25, Organism=Drosophila melanogaster, GI24656782, Length=120, Percent_Identity=48.3333333333333, Blast_Score=112, Evalue=1e-25, Organism=Drosophila melanogaster, GI24656791, Length=120, Percent_Identity=48.3333333333333, Blast_Score=112, Evalue=2e-25,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): GCH1_ALISL (B6EGN8)
Other databases:
- EMBL: FM178379 - RefSeq: YP_002263325.1 - GeneID: 6988819 - GenomeReviews: FM178379_GR - KEGG: vsa:VSAL_I1933 - HOGENOM: HBG370191 - OMA: ARFMSMI - ProtClustDB: PRK09347 - GO: GO:0005737 - HAMAP: MF_00223 - InterPro: IPR001474 - InterPro: IPR020602 - InterPro: IPR018234 - TIGRFAMs: TIGR00063
Pfam domain/function: PF01227 GTP_cyclohydroI
EC number: =3.5.4.16
Molecular weight: Translated: 24475; Mature: 24344
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00859 GTP_CYCLOHYDROL_1_1; PS00860 GTP_CYCLOHYDROL_1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSFSESAILVRDALVARGLETPMKENGISREEKKERIEEHMREILSLLTLDLSDDSLEE CCCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH TPHRIAKMYVDEIFSGLDYANFPKITVIENKMNCDEMVRVNDITLTSTCEHHLVTIDGKA HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHEEECCEEEECCCCCEEEEECCCE TVAYIPREKIIGLSKINRIVRFFAQRPQVQERMTQQILVALQTLLGSDDVAITMEATHYC EEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH VKSRGVMDATSSTTTTALGGIFKRNPATRHEFLSGIR HHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCC >Mature Secondary Structure SSFSESAILVRDALVARGLETPMKENGISREEKKERIEEHMREILSLLTLDLSDDSLEE CCCCHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH TPHRIAKMYVDEIFSGLDYANFPKITVIENKMNCDEMVRVNDITLTSTCEHHLVTIDGKA HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHEEECCEEEECCCCCEEEEECCCE TVAYIPREKIIGLSKINRIVRFFAQRPQVQERMTQQILVALQTLLGSDDVAITMEATHYC EEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH VKSRGVMDATSSTTTTALGGIFKRNPATRHEFLSGIR HHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA