| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695372
Identifier: 209695372
GI number: 209695372
Start: 2038427
End: 2039446
Strand: Direct
Name: 209695372
Synonym: VSAL_I1905
Alternate gene names: NA
Gene position: 2038427-2039446 (Clockwise)
Preceding gene: 209695371
Following gene: 209695373
Centisome position: 61.3
GC content: 35.2
Gene sequence:
>1020_bases ATGTCAGATAGCCTTATCGAGGATTCTCGAACCCAAACTAAGATAATAAGATATACCGTCGGTGTTGGCTTAGCGGTGTT TTTAGCTGCGTTGATTGATTGGCCATTGGCGTTTGTAGCACCAGTATTTGTCGCTAAATTTTTATTAGATAAACCAGAGT TAAACAAAGAAACCATTTATGAATTGATGCTCGCGATGGTCGTAACCATTGCGCTTGGATTATTTTTATCGAATGGCATC ACCCATTATCCAATTCCAATGTTAATCCTTATCGGATTAATGATGTTGTGGGGGTATTATTTGTTTACTGATCCTAAGTG GAACTTGTTTGCAACAATATTAATTATTGCGGTACTAATGTTGCCCTTTATGGCGATATCAAATCCTAGTGTGTCTGTAT TTTTAGCCATCGGATTAAGCAGTTCTGGAGTTGTCGCGGTACTTATTTTTGCTTTTGTTCATATTTACTTCCCTGAGTCA GAATCGAAATTCACAGGTTATCAATCTTCCCCGTTATCAAAGCAACAACGATGGTATGCGGCGTTTAGAGCGATGATTAT TTCTTTTCCTGTAGTTTGTTTTTTCTTTATTTTTCAAATATCAGAAGCACTATTAACGATGATGTTTATTGCGTTGCTGT CATTAATGATAACAGGTGAGAAATCGATTAAATTAAGTGCATTTTTAATTCTTAGCAATGGTATTGGTGGTTTACTCGCC ATCGGTGTATTTGGTGTTTTAAGCCTTGCACCTAACATCATTTTTTATACATTATTTATTTCACTTGTGGCCATTATTAT GGCGACACAAATTTATACTAAACCAGAAAAAGCCCCGATTTACGCAACCGCATTTAGTACTGTACTTGTGTTGTTAGGCA GTACATTAATGAGTTCAGGGGAGATTGATAACAATATGTTTATACGTATATTTCAATTATTTTTGATTGGAATTTATATG ATCGTTGTTTCTTTCTTTTTAGAGACGCGTCATTGGAGATTTTTAACTATGCAAACTTAA
Upstream 100 bases:
>100_bases CGAATTGGTGGCCAAGCGGATGTGATCGTCTACAGTGGTGATAATGTTATTTTTAATACTATTGGTAAATTGTGGATCCG CTTTGTGAGCTTGATGTCTT
Downstream 100 bases:
>100_bases GTGCGCATAAATAACAAGGAGTGTTTATGAAACTTGAAGCGAACTTTTCAAAACAAGCAATTGATGCGTTTATAAAAATT GCAGCCATTGCGATTCTACT
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MSDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIYELMLAMVVTIALGLFLSNGI THYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLMLPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPES ESKFTGYQSSPLSKQQRWYAAFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSGEIDNNMFIRIFQLFLIGIYM IVVSFFLETRHWRFLTMQT
Sequences:
>Translated_339_residues MSDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIYELMLAMVVTIALGLFLSNGI THYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLMLPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPES ESKFTGYQSSPLSKQQRWYAAFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSGEIDNNMFIRIFQLFLIGIYM IVVSFFLETRHWRFLTMQT >Mature_338_residues SDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIYELMLAMVVTIALGLFLSNGIT HYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLMLPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPESE SKFTGYQSSPLSKQQRWYAAFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLAI GVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSGEIDNNMFIRIFQLFLIGIYMI VVSFFLETRHWRFLTMQT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37870; Mature: 37739
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIY CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH ELMLAMVVTIALGLFLSNGITHYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLM HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPESESKFTGYQSSPLSKQQRWYA HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH AFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHH IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC EIDNNMFIRIFQLFLIGIYMIVVSFFLETRHWRFLTMQT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC >Mature Secondary Structure SDSLIEDSRTQTKIIRYTVGVGLAVFLAALIDWPLAFVAPVFVAKFLLDKPELNKETIY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH ELMLAMVVTIALGLFLSNGITHYPIPMLILIGLMMLWGYYLFTDPKWNLFATILIIAVLM HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LPFMAISNPSVSVFLAIGLSSSGVVAVLIFAFVHIYFPESESKFTGYQSSPLSKQQRWYA HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH AFRAMIISFPVVCFFFIFQISEALLTMMFIALLSLMITGEKSIKLSAFLILSNGIGGLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHH IGVFGVLSLAPNIIFYTLFISLVAIIMATQIYTKPEKAPIYATAFSTVLVLLGSTLMSSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC EIDNNMFIRIFQLFLIGIYMIVVSFFLETRHWRFLTMQT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA