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The map label for this gene is yibH [H]

Identifier: 209695371

GI number: 209695371

Start: 2037316

End: 2038437

Strand: Direct

Name: yibH [H]

Synonym: VSAL_I1904

Alternate gene names: 209695371

Gene position: 2037316-2038437 (Clockwise)

Preceding gene: 209695368

Following gene: 209695372

Centisome position: 61.27

GC content: 40.29

Gene sequence:

>1122_bases
ATGACGGAAAAAATAGAAGACACCAAGGCAGAAAACAAATCAGTTAATCAAACGGTTAAAAAGACAAATAAAGTTCGGAA
AATAACAAATTACCTACTAATCACGGTCATTACTTTATTATTATTTAGCATTATTTCTGATCGAGTCATTCCACTTACAG
ATAACGCACGAGTGAAGGGGTATGTGGTTCCAATTAAGCCACAGGTATCAGGGCAAGTTTTTGATATTTTAGTTCAGCCT
AATCAGCTTGTAGCACAAGGAGAGGTACTCGCTAAGCTAAATCCTGTCGATTATGAAATTGCAGTAAAACAAGCAGAACA
AAATTTGGAAATTGCAGGTCAAAATGTTGGAGCGCAAACGGCAATGATTGCTTCTTCACAAGCAAGGTTAACGAGTGCGA
ATGTTGAATTAGAAAATGTGAGATTACAATCTGGTCGAATCCTTGAAATGGCAGAGCGTGGTGTGGTATCTCAATCTGAT
GCTGACCAATCTCGAGCATCACTGGCAACGGCAAGGGCAAATGTTGTTAATGCACAAGCTGATCTTGAGAAATCAAAACG
CCAATTAGGAGCCGATGGAGAAGATAACAGTCAGATTAAAGCGGCGTTATTAGCATTAGAGCAAGCCCAAATTAATTTAG
AGCGGACAGAAATCAAAGCACCTACCGCTGGTGGTGTTTCTAATTTTAGTTTATCTGAAGGTTTTTATGCGTCTGTGGGG
CAGCCTATCATGACATTTGTCTCGACAGAAAGCATATGGATTGAAGCTTATTTTCGAGAGAATAGCTTAGGTAACATTAA
GGTTGGAGATGCTGTTGAGGTTGCGCTTGATTTTGCTCCAGGAAAAGTAATTAAAGGCACAGTAACGAGTGTCGATTGGG
GGGTTGATTGGGGGCAGAATGATCAAGCGGGTAAATTAGCGCAAGCGAATAATCAAACGGGTTGGTTACGTCAAACACAA
ATGCTACCGATAGCGATTGAGTTTGATCACTCACAAGCAACTGGATTACTACGAATTGGTGGCCAAGCGGATGTGATCGT
CTACAGTGGTGATAATGTTATTTTTAATACTATTGGTAAATTGTGGATCCGCTTTGTGAGCTTGATGTCTTATGTCAGAT
AG

Upstream 100 bases:

>100_bases
ACTATTAAATAATAAGTAAATTTTGATAAACATCACTCCATTAATTTAAGAAAGCAACTATACATATATAAATGGAATCA
ATGAGTAGTAGGTTATAAAT

Downstream 100 bases:

>100_bases
CCTTATCGAGGATTCTCGAACCCAAACTAAGATAATAAGATATACCGTCGGTGTTGGCTTAGCGGTGTTTTTAGCTGCGT
TGATTGATTGGCCATTGGCG

Product: secretion protein, HlyD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MTEKIEDTKAENKSVNQTVKKTNKVRKITNYLLITVITLLLFSIISDRVIPLTDNARVKGYVVPIKPQVSGQVFDILVQP
NQLVAQGEVLAKLNPVDYEIAVKQAEQNLEIAGQNVGAQTAMIASSQARLTSANVELENVRLQSGRILEMAERGVVSQSD
ADQSRASLATARANVVNAQADLEKSKRQLGADGEDNSQIKAALLALEQAQINLERTEIKAPTAGGVSNFSLSEGFYASVG
QPIMTFVSTESIWIEAYFRENSLGNIKVGDAVEVALDFAPGKVIKGTVTSVDWGVDWGQNDQAGKLAQANNQTGWLRQTQ
MLPIAIEFDHSQATGLLRIGGQADVIVYSGDNVIFNTIGKLWIRFVSLMSYVR

Sequences:

>Translated_373_residues
MTEKIEDTKAENKSVNQTVKKTNKVRKITNYLLITVITLLLFSIISDRVIPLTDNARVKGYVVPIKPQVSGQVFDILVQP
NQLVAQGEVLAKLNPVDYEIAVKQAEQNLEIAGQNVGAQTAMIASSQARLTSANVELENVRLQSGRILEMAERGVVSQSD
ADQSRASLATARANVVNAQADLEKSKRQLGADGEDNSQIKAALLALEQAQINLERTEIKAPTAGGVSNFSLSEGFYASVG
QPIMTFVSTESIWIEAYFRENSLGNIKVGDAVEVALDFAPGKVIKGTVTSVDWGVDWGQNDQAGKLAQANNQTGWLRQTQ
MLPIAIEFDHSQATGLLRIGGQADVIVYSGDNVIFNTIGKLWIRFVSLMSYVR
>Mature_372_residues
TEKIEDTKAENKSVNQTVKKTNKVRKITNYLLITVITLLLFSIISDRVIPLTDNARVKGYVVPIKPQVSGQVFDILVQPN
QLVAQGEVLAKLNPVDYEIAVKQAEQNLEIAGQNVGAQTAMIASSQARLTSANVELENVRLQSGRILEMAERGVVSQSDA
DQSRASLATARANVVNAQADLEKSKRQLGADGEDNSQIKAALLALEQAQINLERTEIKAPTAGGVSNFSLSEGFYASVGQ
PIMTFVSTESIWIEAYFRENSLGNIKVGDAVEVALDFAPGKVIKGTVTSVDWGVDWGQNDQAGKLAQANNQTGWLRQTQM
LPIAIEFDHSQATGLLRIGGQADVIVYSGDNVIFNTIGKLWIRFVSLMSYVR

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=328, Percent_Identity=31.7073170731707, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1789041, Length=355, Percent_Identity=29.5774647887324, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1790012, Length=331, Percent_Identity=29.0030211480363, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788711, Length=297, Percent_Identity=28.956228956229, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1790519, Length=307, Percent_Identity=28.3387622149837, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87081951, Length=280, Percent_Identity=26.7857142857143, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789637, Length=314, Percent_Identity=26.4331210191083, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 40578; Mature: 40446

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00761 SPASE_I_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKIEDTKAENKSVNQTVKKTNKVRKITNYLLITVITLLLFSIISDRVIPLTDNARVKG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEE
YVVPIKPQVSGQVFDILVQPNQLVAQGEVLAKLNPVDYEIAVKQAEQNLEIAGQNVGAQT
EEEEECCCCCCEEEEEEECCCHHHHCCCEEEECCCCCEEEEEHHHHCCCEECCCCCCCCE
AMIASSQARLTSANVELENVRLQSGRILEMAERGVVSQSDADQSRASLATARANVVNAQA
EEEECCCCEEEECCEEEEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHEECHH
DLEKSKRQLGADGEDNSQIKAALLALEQAQINLERTEIKAPTAGGVSNFSLSEGFYASVG
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCEEEHHEECCCCCCCCCCCCCCCCCHHHCC
QPIMTFVSTESIWIEAYFRENSLGNIKVGDAVEVALDFAPGKVIKGTVTSVDWGVDWGQN
CHHHHHHCCCEEEEEEEEECCCCCCEEECCEEEEEEECCCCCEEEEEEEEEECCCCCCCC
DQAGKLAQANNQTGWLRQTQMLPIAIEFDHSQATGLLRIGGQADVIVYSGDNVIFNTIGK
CCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEECCCEEEEEECCCCEEHHHHHH
LWIRFVSLMSYVR
HHHHHHHHHHHCC
>Mature Secondary Structure 
TEKIEDTKAENKSVNQTVKKTNKVRKITNYLLITVITLLLFSIISDRVIPLTDNARVKG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEE
YVVPIKPQVSGQVFDILVQPNQLVAQGEVLAKLNPVDYEIAVKQAEQNLEIAGQNVGAQT
EEEEECCCCCCEEEEEEECCCHHHHCCCEEEECCCCCEEEEEHHHHCCCEECCCCCCCCE
AMIASSQARLTSANVELENVRLQSGRILEMAERGVVSQSDADQSRASLATARANVVNAQA
EEEECCCCEEEECCEEEEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHEECHH
DLEKSKRQLGADGEDNSQIKAALLALEQAQINLERTEIKAPTAGGVSNFSLSEGFYASVG
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCEEEHHEECCCCCCCCCCCCCCCCCHHHCC
QPIMTFVSTESIWIEAYFRENSLGNIKVGDAVEVALDFAPGKVIKGTVTSVDWGVDWGQN
CHHHHHHCCCEEEEEEEEECCCCCCEEECCEEEEEEECCCCCEEEEEEEEEECCCCCCCC
DQAGKLAQANNQTGWLRQTQMLPIAIEFDHSQATGLLRIGGQADVIVYSGDNVIFNTIGK
CCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEECCCEEEEEECCCCEEHHHHHH
LWIRFVSLMSYVR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]