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The map label for this gene is ybgF [H]

Identifier: 209695367

GI number: 209695367

Start: 2033447

End: 2034211

Strand: Direct

Name: ybgF [H]

Synonym: VSAL_I1900

Alternate gene names: 209695367

Gene position: 2033447-2034211 (Clockwise)

Preceding gene: 209695366

Following gene: 209695368

Centisome position: 61.15

GC content: 41.18

Gene sequence:

>765_bases
ATGAAATACAGTAACCTTAAGCGAATTATTCCGCTTACGTTGCTGGCGAGTGCGGCGACCCTTGTGGTCGCCGCTCCTGC
TCCAGTCACGGATTTAAATGCGACCTCAGGCTCATCTGCTCAAGCGTCATCAACGAGTATTGAGCGTTTAGAGCGTTTAA
TTAAAAGCCGCAATCAAATTCAACTTCAGTTACAACAACAACTCGATGGATTATCAGAAGAACTTTCTGAGATTCGAGGT
ACTGTTGAGCGTAATAGTTATGAACTTGATCAAATGTTAGAGCGCCAACGTCAACTGTATGTTGAAATTGACACCTTAAG
AACAGCGAAACCATCGACAGCAAAACCTGTTGTAGATAATGACGCTAATTCTGGTGAAGGCTCATACGCAACTGATACGA
ACGAAAATGAAGCGTATCAGAATGCAGTTGATTTGATCTTGAAGAAGAAAGATTACGCAGGAGCAACAAAAGCATTCCAA
GAATTTGTTGCCGCTTATCCTGATTCGGTTTATAGCTCTAATGCTCATTATTGGCTAGGGCAACTTTATTTTGCTCAGAA
GAATGACGTTGAGGCAGCAAAAAGCTTTACCAAAGTGGTTAGTTACGCGGATTCAAATAAACGAGCGGATGCTTTGCTAA
AACTGGGCGAGTTAGCCAAACGTAATAATAAAGCTGCAGCACAAAAATATTATCAAAAAGTAATAACAGAGTACTCAGAC
AGTACAACAGCTCAAACCGCTGCTGCACAATTGAAATCGTTATAA

Upstream 100 bases:

>100_bases
TGAAGAAAAACCTCTAGTTCTTGGCCAAACAGCTGAAGACTACGCTAAAAACCGTCGTGCAGTATTAGTATACTAATCGA
TAGTTTATAAGGCAGCTTAT

Downstream 100 bases:

>100_bases
TTCATTATTTGATATATTACTGTAGTAAAAGGAGCTGATTTGCTCCTTTTTTATTTCCCTTAACTTGATGACCCCCTAAG
AAGAGGTATAATGTTCAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKYSNLKRIIPLTLLASAATLVVAAPAPVTDLNATSGSSAQASSTSIERLERLIKSRNQIQLQLQQQLDGLSEELSEIRG
TVERNSYELDQMLERQRQLYVEIDTLRTAKPSTAKPVVDNDANSGEGSYATDTNENEAYQNAVDLILKKKDYAGATKAFQ
EFVAAYPDSVYSSNAHYWLGQLYFAQKNDVEAAKSFTKVVSYADSNKRADALLKLGELAKRNNKAAAQKYYQKVITEYSD
STTAQTAAAQLKSL

Sequences:

>Translated_254_residues
MKYSNLKRIIPLTLLASAATLVVAAPAPVTDLNATSGSSAQASSTSIERLERLIKSRNQIQLQLQQQLDGLSEELSEIRG
TVERNSYELDQMLERQRQLYVEIDTLRTAKPSTAKPVVDNDANSGEGSYATDTNENEAYQNAVDLILKKKDYAGATKAFQ
EFVAAYPDSVYSSNAHYWLGQLYFAQKNDVEAAKSFTKVVSYADSNKRADALLKLGELAKRNNKAAAQKYYQKVITEYSD
STTAQTAAAQLKSL
>Mature_254_residues
MKYSNLKRIIPLTLLASAATLVVAAPAPVTDLNATSGSSAQASSTSIERLERLIKSRNQIQLQLQQQLDGLSEELSEIRG
TVERNSYELDQMLERQRQLYVEIDTLRTAKPSTAKPVVDNDANSGEGSYATDTNENEAYQNAVDLILKKKDYAGATKAFQ
EFVAAYPDSVYSSNAHYWLGQLYFAQKNDVEAAKSFTKVVSYADSNKRADALLKLGELAKRNNKAAAQKYYQKVITEYSD
STTAQTAAAQLKSL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=223, Percent_Identity=32.7354260089686, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28008; Mature: 28008

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSNLKRIIPLTLLASAATLVVAAPAPVTDLNATSGSSAQASSTSIERLERLIKSRNQI
CCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHH
QLQLQQQLDGLSEELSEIRGTVERNSYELDQMLERQRQLYVEIDTLRTAKPSTAKPVVDN
HHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHHCCCCCCCCCCCCCC
DANSGEGSYATDTNENEAYQNAVDLILKKKDYAGATKAFQEFVAAYPDSVYSSNAHYWLG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEHH
QLYFAQKNDVEAAKSFTKVVSYADSNKRADALLKLGELAKRNNKAAAQKYYQKVITEYSD
HEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
STTAQTAAAQLKSL
CHHHHHHHHHHHCC
>Mature Secondary Structure
MKYSNLKRIIPLTLLASAATLVVAAPAPVTDLNATSGSSAQASSTSIERLERLIKSRNQI
CCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHH
QLQLQQQLDGLSEELSEIRGTVERNSYELDQMLERQRQLYVEIDTLRTAKPSTAKPVVDN
HHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHHCCCCCCCCCCCCCC
DANSGEGSYATDTNENEAYQNAVDLILKKKDYAGATKAFQEFVAAYPDSVYSSNAHYWLG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEHH
QLYFAQKNDVEAAKSFTKVVSYADSNKRADALLKLGELAKRNNKAAAQKYYQKVITEYSD
HEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
STTAQTAAAQLKSL
CHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]