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The map label for this gene is rarA [H]

Identifier: 209695310

GI number: 209695310

Start: 1978120

End: 1979466

Strand: Direct

Name: rarA [H]

Synonym: VSAL_I1843

Alternate gene names: 209695310

Gene position: 1978120-1979466 (Clockwise)

Preceding gene: 209695309

Following gene: 209695311

Centisome position: 59.49

GC content: 41.87

Gene sequence:

>1347_bases
GTGAGTAATTTCAGTTTAGATTTTTCAGCAGGGGACGATTTTCGTCCCCTTGCTGCTAGAATGCGCCCTCAAAATATTGA
GCAATATATTGGTCAACAGCATTTATTAGCGGTGGGTAAACCATTACGTCGCGCGCTTGAAGCTGGCCAAATACATTCAA
TGATTTTATGGGGGCCTCCGGGTACCGGTAAAACAACGTTAGCGGAAGTTGCTGCAAATTACGCAAATGCAGAAGTTGAG
CGTGTTTCTGCTGTGACGTCTGGCGTAAAAGATATTCGAGCGGCGATTGACAAAGCCAAAGAAAATCAAACGACAGGCCG
CAGAACGATTTTATTTGTGGATGAAGTTCATCGCTTTAATAAAAGTCAGCAAGATGCGTTTTTGCCTCATATCGAAAATG
GGACAATCACGTTTATTGGTGCGACAACGGAAAACCCGTCTTTTGAGCTAAACAATGCATTATTATCTAGAGCTCGGGTA
TACAAATTAAAATCATTAGAAAAACAAGATATTGTACAGATTATCGAACAAGCATTGACCGATAAAAATCGCGGCTTAAA
TGACGATAATTTTGTTCTTCCTGATGACGTAAAATTGCAATTAGCTGATTTAGTGTCTGGTGACGCTCGCATGTCTCTAA
ATTATTTAGAGTTGTTGCATGATATGGCAGAAGAAAACCACGAAGGTAAAAAAGTGGTGGATTTACCTTTATTAGCGGAA
GTTGCCGGTGAAAAACTGGCACGTTTCGATAATAAAGGTGACATGTGGTATGACTTAATCTCAGCGGTTCATAAATCGAT
TCGTGGTTCAAATCCGGATGCCGCTTTGTATTGGGCAGCACGAATTATGGCAGCAGGGGGCGATCCTCTGTATGTAGTAC
GTCGATTATTAGCGATTGCATCAGAAGATATTGGTAACGCTGATCCACGAGCAATGGAAGTGGCTTTGAATGCATGGGAT
TGTTTTACTCGACTTGGTCCTGCAGAAGGCGAAAGAGCGATAGCACAAGCGGTCGTCTATTTAGCGTGTGCACCAAAAAG
TAATGCAGTTTATACCGCATGGAAACAAGCACAAATGGATGCGATTAACTCGCCGGATTATGATGTGCCTAATCACCTAC
GTAACGCGCCAACCTCATTAATGAAAGACATGGGTTATGGTGCTGATTATCGTTATGCGCATGATGAACCTAATGCATAC
GCTTCTGGTGAGAACTATTTCCCACCAGAAATGCAGGATCGCAAGTACTACTTTCCAACAAAACGTGGTCTAGAAACCAA
AATTAGTGAAAAGCTAGAGTATTTAGCCCAATTAGATCAAAACAGTCCCTTAAAACGCTACCAATAA

Upstream 100 bases:

>100_bases
AATCTAATTTTATGTTCACTGTCCCTGATGGTGTAGATATTGATGATCAGCGTTAAGGTCTTACTTAATGCGAAATCATG
TTTAGAATAAAAGGATAAAC

Downstream 100 bases:

>100_bases
AAGGGCATTTTCGGTATCTTATTCAAATCGCAATTTTGAACTGAAAATTGCACAAAATTTTATTTTTAAGTGGGTTCTAT
TTACTTTGAACGCACAATGA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MSNFSLDFSAGDDFRPLAARMRPQNIEQYIGQQHLLAVGKPLRRALEAGQIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKDIRAAIDKAKENQTTGRRTILFVDEVHRFNKSQQDAFLPHIENGTITFIGATTENPSFELNNALLSRARV
YKLKSLEKQDIVQIIEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENHEGKKVVDLPLLAE
VAGEKLARFDNKGDMWYDLISAVHKSIRGSNPDAALYWAARIMAAGGDPLYVVRRLLAIASEDIGNADPRAMEVALNAWD
CFTRLGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMDAINSPDYDVPNHLRNAPTSLMKDMGYGADYRYAHDEPNAY
ASGENYFPPEMQDRKYYFPTKRGLETKISEKLEYLAQLDQNSPLKRYQ

Sequences:

>Translated_448_residues
MSNFSLDFSAGDDFRPLAARMRPQNIEQYIGQQHLLAVGKPLRRALEAGQIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKDIRAAIDKAKENQTTGRRTILFVDEVHRFNKSQQDAFLPHIENGTITFIGATTENPSFELNNALLSRARV
YKLKSLEKQDIVQIIEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENHEGKKVVDLPLLAE
VAGEKLARFDNKGDMWYDLISAVHKSIRGSNPDAALYWAARIMAAGGDPLYVVRRLLAIASEDIGNADPRAMEVALNAWD
CFTRLGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMDAINSPDYDVPNHLRNAPTSLMKDMGYGADYRYAHDEPNAY
ASGENYFPPEMQDRKYYFPTKRGLETKISEKLEYLAQLDQNSPLKRYQ
>Mature_447_residues
SNFSLDFSAGDDFRPLAARMRPQNIEQYIGQQHLLAVGKPLRRALEAGQIHSMILWGPPGTGKTTLAEVAANYANAEVER
VSAVTSGVKDIRAAIDKAKENQTTGRRTILFVDEVHRFNKSQQDAFLPHIENGTITFIGATTENPSFELNNALLSRARVY
KLKSLEKQDIVQIIEQALTDKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENHEGKKVVDLPLLAEV
AGEKLARFDNKGDMWYDLISAVHKSIRGSNPDAALYWAARIMAAGGDPLYVVRRLLAIASEDIGNADPRAMEVALNAWDC
FTRLGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMDAINSPDYDVPNHLRNAPTSLMKDMGYGADYRYAHDEPNAYA
SGENYFPPEMQDRKYYFPTKRGLETKISEKLEYLAQLDQNSPLKRYQ

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=42.2727272727273, Blast_Score=296, Evalue=2e-80,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=37.7272727272727, Blast_Score=237, Evalue=2e-62,
Organism=Escherichia coli, GI1787119, Length=448, Percent_Identity=73.6607142857143, Blast_Score=694, Evalue=0.0,
Organism=Escherichia coli, GI1788167, Length=239, Percent_Identity=25.5230125523013, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786676, Length=199, Percent_Identity=26.1306532663317, Blast_Score=62, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=429, Percent_Identity=39.8601398601399, Blast_Score=297, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49984; Mature: 49853

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFSLDFSAGDDFRPLAARMRPQNIEQYIGQQHLLAVGKPLRRALEAGQIHSMILWGPP
CCCCEEECCCCCCCHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
GTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIDKAKENQTTGRRTILFVDEVHRFN
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCC
KSQQDAFLPHIENGTITFIGATTENPSFELNNALLSRARVYKLKSLEKQDIVQIIEQALT
CCCCCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
DKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENHEGKKVVDLPLLAE
HCCCCCCCCCEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHH
VAGEKLARFDNKGDMWYDLISAVHKSIRGSNPDAALYWAARIMAAGGDPLYVVRRLLAIA
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
SEDIGNADPRAMEVALNAWDCFTRLGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMD
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCEEHHHHHHHHH
AINSPDYDVPNHLRNAPTSLMKDMGYGADYRYAHDEPNAYASGENYFPPEMQDRKYYFPT
CCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
KRGLETKISEKLEYLAQLDQNSPLKRYQ
CCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SNFSLDFSAGDDFRPLAARMRPQNIEQYIGQQHLLAVGKPLRRALEAGQIHSMILWGPP
CCCEEECCCCCCCHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
GTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIDKAKENQTTGRRTILFVDEVHRFN
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCC
KSQQDAFLPHIENGTITFIGATTENPSFELNNALLSRARVYKLKSLEKQDIVQIIEQALT
CCCCCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
DKNRGLNDDNFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENHEGKKVVDLPLLAE
HCCCCCCCCCEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHH
VAGEKLARFDNKGDMWYDLISAVHKSIRGSNPDAALYWAARIMAAGGDPLYVVRRLLAIA
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
SEDIGNADPRAMEVALNAWDCFTRLGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMD
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCEEHHHHHHHHH
AINSPDYDVPNHLRNAPTSLMKDMGYGADYRYAHDEPNAYASGENYFPPEMQDRKYYFPT
CCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
KRGLETKISEKLEYLAQLDQNSPLKRYQ
CCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]