Click here to switch to the map view.

The map label for this gene is lrp [H]

Identifier: 209695307

GI number: 209695307

Start: 1973473

End: 1973964

Strand: Direct

Name: lrp [H]

Synonym: VSAL_I1840

Alternate gene names: 209695307

Gene position: 1973473-1973964 (Clockwise)

Preceding gene: 209695300

Following gene: 209695308

Centisome position: 59.35

GC content: 38.01

Gene sequence:

>492_bases
ATGGTAGATAATAAGAAACCGTCCAAGGACCTGGATCGTATCGATCGCAATATTTTGAATGAACTCCAAAAAGATGGCCG
AATTTCAAATGTTGAATTATCTAAGAGAGTAGGGTTATCTCCTACTCCATGTTTAGAGCGCGTTCGTCGTTTAGAACGCC
AAGGGTATATTAATGGCTATACGGCATTACTAAACCCACAGTATCTTGATGCATCATTGTTAGTATTTGTTGAAATCACA
TTAAACCGTGGTGCTCCAGATGTTTTCGAACAATTTAATGTTGCAGTGCAGTTATTAGATGATATTCAAGAGTGTCACTT
AGTTTCAGGTGATTTTGATTATCTTTTAAAGACTCGTGTATCAGATATGAGTGCTTATCGCCGATTACTTGGTGATACAC
TATTACGTCTTCCGGGAGTTAACGACACACGTACTTACGTGGTTATGGAAGAGGTTAAACAGACGAATAATTTAGTGATT
AAAACGCGCTAG

Upstream 100 bases:

>100_bases
ATTTGTATCTAGTATAGATTGTAAAAAGCAAAATTTGATGCTAAATATTAGAAAGTTGTAGTATATTTTTTTGCAAGGAA
GTAATAAGGTGGAATAAAAA

Downstream 100 bases:

>100_bases
ATACAGCAAGATAATTAAAGTACCTGAAGGCAGTCGACATAAGTGAACGTTATTCCTTGCTAGACTGTTAGTGACGATAA
ATACGTTAAGTATGTATTAG

Product: leucine-responsive transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MVDNKKPSKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGYINGYTALLNPQYLDASLLVFVEIT
LNRGAPDVFEQFNVAVQLLDDIQECHLVSGDFDYLLKTRVSDMSAYRRLLGDTLLRLPGVNDTRTYVVMEEVKQTNNLVI
KTR

Sequences:

>Translated_163_residues
MVDNKKPSKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGYINGYTALLNPQYLDASLLVFVEIT
LNRGAPDVFEQFNVAVQLLDDIQECHLVSGDFDYLLKTRVSDMSAYRRLLGDTLLRLPGVNDTRTYVVMEEVKQTNNLVI
KTR
>Mature_163_residues
MVDNKKPSKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGYINGYTALLNPQYLDASLLVFVEIT
LNRGAPDVFEQFNVAVQLLDDIQECHLVSGDFDYLLKTRVSDMSAYRRLLGDTLLRLPGVNDTRTYVVMEEVKQTNNLVI
KTR

Specific function: Mediates a global response to leucine. Exogenous leucine affects the expression of a number of different operons; lrp mediates this effect for at least some of these operons. For example it is regulator of the branched-chain amino acid transport genes [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=164, Percent_Identity=90.8536585365854, Blast_Score=301, Evalue=2e-83,
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=32.4503311258278, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18712; Mature: 18712

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDNKKPSKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGYINGY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCCHHHHHHHHHHHCCCCCCH
TALLNPQYLDASLLVFVEITLNRGAPDVFEQFNVAVQLLDDIQECHLVSGDFDYLLKTRV
HHHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SDMSAYRRLLGDTLLRLPGVNDTRTYVVMEEVKQTNNLVIKTR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MVDNKKPSKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGYINGY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCCHHHHHHHHHHHCCCCCCH
TALLNPQYLDASLLVFVEITLNRGAPDVFEQFNVAVQLLDDIQECHLVSGDFDYLLKTRV
HHHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SDMSAYRRLLGDTLLRLPGVNDTRTYVVMEEVKQTNNLVIKTR
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]