| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695300
Identifier: 209695300
GI number: 209695300
Start: 1958017
End: 1959168
Strand: Direct
Name: 209695300
Synonym: VSAL_I1830
Alternate gene names: NA
Gene position: 1958017-1959168 (Clockwise)
Preceding gene: 209695298
Following gene: 209695307
Centisome position: 58.88
GC content: 40.1
Gene sequence:
>1152_bases ATGATCACTCATGTTGGCATTATGGATCAAGACCCTGTCCGTCTTGTGACTCCACTTCTCGACCTTTCTGTAAAAGGCGA ACATATGATTTTCATTGGGGATGAAAATCAAAAAGACATGTTCGTTCGTTTAGAATCTATTCTTCAATACAAAGGCATTA GCTCTGAGTTTTACGAAATCCCTAATATCGTAGATACTCATCTTATCAAGCAATCTCTACAAGCGCTTGCGGCTGATATT AAAGACAGATACAGCGAAGTAAAACTGAACGCAAGCTGTGGCCTTCGTCACCGTCTTCTTTCTGCTTATGAAGTTTTTCG TTCATACCATTGGCCTATTTTTGTGGTTGAACCTTTCAGTGACAAACTATGCTGGGTTTATCCTGATGGTCGCAAACAAA AACACGTTGCTGATAATATTCGATTAAGTGATTATCTTGCTATTTTTGGTGCTCGTTGTGAGTTCTCTGAAACCGAGCTT CCTGAAAGCATGGATAAGCGTCTGCGTGAATTATGTCAACGCTGGGCAAGTAACGCTCTTGAATTGGGCCCAGGTCTTGC GACGCTAAACTATTTAGCAACAACCTGTCGAAAAGAACAACGTTTAGATGTAGAAGTTACGGAGAAACAACAAAGCTACA AAGAGCTTAATATGTTGCTAACTGATCTTGTTGAAACAGGATTAGCTACCTACGAAAACGGCACATTAACTTTTGATTGT GAAGAAGCTCGACGTTTAGCGAATGGAGAATGGTTAGAAATTTTGGTTCATAATACCGTCGTCGATATCCAACAATATTT ACCGACGCTTCAAGATCACTCATTGAATGTACAAGTTCACCGTGAAATTGGCACAAAAGACGTTCGTAATGAACTTGATG TGGTTAGTATCGTGAATAACAAGCTGCATATTATTGAATGTAAGACCAAAGGCATGCGTGATGATGGCGATGATACGCTT TATAAATTAGAGTCATTACGTGACCTTCTTGGCGGCTTACAAGCACGAGCAATGTTAGTTAGTTTCCGACCTTTACGTAA TAATGACATTATGCGAGCACAAGATTTAGGCTTAGCGATCATTGGTCCTGATGAATTAGGCGATCTTAAAAAGCATCTCT TAAACTGGTTCTTAGCCGCTGGCGGTCATTAA
Upstream 100 bases:
>100_bases TCCTCCCCCTCATAACTGTTGTATCAAATAGAAAAAACGAATTACACATGCCTTCTCATTACCATTATATGTGTAGTTAT TACATTACAAGGATTATTAA
Downstream 100 bases:
>100_bases TCTCTTTGTAAATAATGATCCGATACTAAAAAAGACCGATTAACTGATCTTTTTTATTATCGGGACTTTAAATTGCATCA ATATACAGCGATAAAAATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEIPNIVDTHLIKQSLQALAADI KDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFSDKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL PESMDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH
Sequences:
>Translated_383_residues MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEIPNIVDTHLIKQSLQALAADI KDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFSDKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL PESMDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH >Mature_383_residues MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEIPNIVDTHLIKQSLQALAADI KDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFSDKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL PESMDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43828; Mature: 43828
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEI CCEECCCCCCCCHHHHHHHHHCEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHC PNIVDTHLIKQSLQALAADIKDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFS CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCC DKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETELPESMDKRLRELCQRWASNAL CCEEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH ELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC HCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEH EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNN HHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEECC KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAI CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEHHHCCEEE IGPDELGDLKKHLLNWFLAAGGH ECCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEI CCEECCCCCCCCHHHHHHHHHCEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHC PNIVDTHLIKQSLQALAADIKDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFS CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCC DKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETELPESMDKRLRELCQRWASNAL CCEEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH ELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC HCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEH EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNN HHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEECC KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAI CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEHHHCCEEE IGPDELGDLKKHLLNWFLAAGGH ECCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA