Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695300

Identifier: 209695300

GI number: 209695300

Start: 1958017

End: 1959168

Strand: Direct

Name: 209695300

Synonym: VSAL_I1830

Alternate gene names: NA

Gene position: 1958017-1959168 (Clockwise)

Preceding gene: 209695298

Following gene: 209695307

Centisome position: 58.88

GC content: 40.1

Gene sequence:

>1152_bases
ATGATCACTCATGTTGGCATTATGGATCAAGACCCTGTCCGTCTTGTGACTCCACTTCTCGACCTTTCTGTAAAAGGCGA
ACATATGATTTTCATTGGGGATGAAAATCAAAAAGACATGTTCGTTCGTTTAGAATCTATTCTTCAATACAAAGGCATTA
GCTCTGAGTTTTACGAAATCCCTAATATCGTAGATACTCATCTTATCAAGCAATCTCTACAAGCGCTTGCGGCTGATATT
AAAGACAGATACAGCGAAGTAAAACTGAACGCAAGCTGTGGCCTTCGTCACCGTCTTCTTTCTGCTTATGAAGTTTTTCG
TTCATACCATTGGCCTATTTTTGTGGTTGAACCTTTCAGTGACAAACTATGCTGGGTTTATCCTGATGGTCGCAAACAAA
AACACGTTGCTGATAATATTCGATTAAGTGATTATCTTGCTATTTTTGGTGCTCGTTGTGAGTTCTCTGAAACCGAGCTT
CCTGAAAGCATGGATAAGCGTCTGCGTGAATTATGTCAACGCTGGGCAAGTAACGCTCTTGAATTGGGCCCAGGTCTTGC
GACGCTAAACTATTTAGCAACAACCTGTCGAAAAGAACAACGTTTAGATGTAGAAGTTACGGAGAAACAACAAAGCTACA
AAGAGCTTAATATGTTGCTAACTGATCTTGTTGAAACAGGATTAGCTACCTACGAAAACGGCACATTAACTTTTGATTGT
GAAGAAGCTCGACGTTTAGCGAATGGAGAATGGTTAGAAATTTTGGTTCATAATACCGTCGTCGATATCCAACAATATTT
ACCGACGCTTCAAGATCACTCATTGAATGTACAAGTTCACCGTGAAATTGGCACAAAAGACGTTCGTAATGAACTTGATG
TGGTTAGTATCGTGAATAACAAGCTGCATATTATTGAATGTAAGACCAAAGGCATGCGTGATGATGGCGATGATACGCTT
TATAAATTAGAGTCATTACGTGACCTTCTTGGCGGCTTACAAGCACGAGCAATGTTAGTTAGTTTCCGACCTTTACGTAA
TAATGACATTATGCGAGCACAAGATTTAGGCTTAGCGATCATTGGTCCTGATGAATTAGGCGATCTTAAAAAGCATCTCT
TAAACTGGTTCTTAGCCGCTGGCGGTCATTAA

Upstream 100 bases:

>100_bases
TCCTCCCCCTCATAACTGTTGTATCAAATAGAAAAAACGAATTACACATGCCTTCTCATTACCATTATATGTGTAGTTAT
TACATTACAAGGATTATTAA

Downstream 100 bases:

>100_bases
TCTCTTTGTAAATAATGATCCGATACTAAAAAAGACCGATTAACTGATCTTTTTTATTATCGGGACTTTAAATTGCATCA
ATATACAGCGATAAAAATGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEIPNIVDTHLIKQSLQALAADI
KDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFSDKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL
PESMDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC
EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL
YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH

Sequences:

>Translated_383_residues
MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEIPNIVDTHLIKQSLQALAADI
KDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFSDKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL
PESMDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC
EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL
YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH
>Mature_383_residues
MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEIPNIVDTHLIKQSLQALAADI
KDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFSDKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETEL
PESMDKRLRELCQRWASNALELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC
EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNNKLHIIECKTKGMRDDGDDTL
YKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAIIGPDELGDLKKHLLNWFLAAGGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43828; Mature: 43828

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEI
CCEECCCCCCCCHHHHHHHHHCEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHC
PNIVDTHLIKQSLQALAADIKDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFS
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
DKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETELPESMDKRLRELCQRWASNAL
CCEEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH
ELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC
HCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEH
EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNN
HHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEECC
KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAI
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEHHHCCEEE
IGPDELGDLKKHLLNWFLAAGGH
ECCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MITHVGIMDQDPVRLVTPLLDLSVKGEHMIFIGDENQKDMFVRLESILQYKGISSEFYEI
CCEECCCCCCCCHHHHHHHHHCEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHC
PNIVDTHLIKQSLQALAADIKDRYSEVKLNASCGLRHRLLSAYEVFRSYHWPIFVVEPFS
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
DKLCWVYPDGRKQKHVADNIRLSDYLAIFGARCEFSETELPESMDKRLRELCQRWASNAL
CCEEEECCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHH
ELGPGLATLNYLATTCRKEQRLDVEVTEKQQSYKELNMLLTDLVETGLATYENGTLTFDC
HCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEH
EEARRLANGEWLEILVHNTVVDIQQYLPTLQDHSLNVQVHREIGTKDVRNELDVVSIVNN
HHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEECC
KLHIIECKTKGMRDDGDDTLYKLESLRDLLGGLQARAMLVSFRPLRNNDIMRAQDLGLAI
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEHHHCCEEE
IGPDELGDLKKHLLNWFLAAGGH
ECCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA