| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is hscA [H]
Identifier: 209695297
GI number: 209695297
Start: 1954046
End: 1956862
Strand: Direct
Name: hscA [H]
Synonym: VSAL_I1827
Alternate gene names: 209695297
Gene position: 1954046-1956862 (Clockwise)
Preceding gene: 209695296
Following gene: 209695298
Centisome position: 58.77
GC content: 43.17
Gene sequence:
>2817_bases ATGAGTTCGTCTAATCGCTATTTAATTGGTATTGACCTTGGTACAACCCATACCGTTGTTGCTTATACCGATATCTCTCT TGGTATAGAAACCAGCCCGATTAACATCTTCAATATTGATCAATTAATTGGGCCTGGTGAAGTCGCTCGTAAACCGCTCC TCCCTTCATTTCGTTATCATGCCTCAAACAGTCAAGTCAGTGATAATGATCTAACACTGCCTTGGAATGTAAAAGCGCTT GATGGTGAAATAAAAAATGCGATTATTGGTGAATGGGCGCGTGAGTTAGGCTCGAAAGTCGAAGGCCGTCAAGTTGTAAG TGCCAAGAGTTGGCTATCACATACTAAAGTTGATCGCACTTCTGATATCCTACCTTGGGCTGGAGCAGAAGACGTTGAAA AAGTCTCTCCTATTGTTGCCAGTGCGAGCTATTTAAATCACGTTCGCCAATCTTGGAATTACCATCACCCAGACGCACCA ATGGAATTACAAGAAGTGGTGGTAACCGTTCCCGCCTCTTTTGATGAAAGTGCCCGTTCATTTACTATTCAAGCCGCAAA ACTCGCAGGTCTTAATAAAGTCATTCTCTTAGAAGAGCCACAAGCGGTATGTTATGACTGGTATCACCATCATCAAGATA CAGCAAAAGATATCCTGAAAAACGTACCATTAATGGTGGTGTGCGATGTTGGTGGCGGAACCACGGACTTAAGTTTGATC CAAGCGCGGTTTGATAAAGATGAATTATCACTTGATCGCATCGGTGTCGGTGATCACCTTATGCTTGGTGGTGACAACAT CGATCTCGCATTAGCGCATTTAGCAGAGCAACGTTTAGACAGTGGTAAAAAAATGACTGCTGCTGCCTTAACGAAACTGA TTCAGCAGACTCGAAAAACCAAAGAACGCTTATTGTCAGCTAACGCTCCAGAATCAGGTCATATTACTCTTCTCGGATCG GGTTCTAAATTATTAGGTGGTAGCCGTAAGGTTGAATTAAGCAAACAAGAAGTTCATGACATCGCACTGGATGGTTTTTT ACCATTAACCGATTTTAATGACCGCCCAAATCAACGTCAGACGGCAGTGGTTGAATTTGGTCTGCCTTACGCATCCGATC CTGCTATTAGTAAACATCTTGCACAGTTTTTAGATAATCACAAAGAAGTGTCGGCGAAAGCATTAGGTTGGAATGATTCA GATTTGGCAAACCACCAAGATCGAGCAATCCCTGTCGGCTTATTATTAAATGGCGGAGTATTTAACAGCCCTCTTCTTGC TAATCGTTCAGTTGAATTGTTGAATAGCTGGAAAGGTGACAGTGTAACCAGCCTGTCTAATCCTCATCCAGATTTAGCGG TAGCTTATGGTGCCGTGGCTTATGGTAAAGCTCGTCATGGTGCACAGCTTAAAATTGGGGGTGGCTCCGCTCGTTCGTTC TATTTACAGTTAGAAGAAAAAAACAAACAACCTCATGGTTTATGTTTATTAGCAAAAGGCAGCGATGAAGGCGAAGAAAT TCGTATGACGAGTCGTCGTTTCTCTCTGACTTTAGGTGAGCCCGTTCGTTTTAACTTGTTATCGACCACCAAAGACCAAC TTGCTACCTCTGGTATGATCACGGAATTAGCCGATTCAAGCTTTGTCAGTCTGCCACCTTATGTCGTTACACTTGAATCT AGCAAACAAAAAGAGACGCTGCATGCGAATCAAAAAGATCGCGTTGAAGTGACCTTGGCGTGTCAATTTACTGAAGTGGG AACCATCAAAATTGAATGTGTTTCTGTAGAAGACGATTCACAACGTTGGTTAGTTGAATTTGAAGTAAGAAATCAAGCTT CAAATAAAAGTCATCATCTAGCAGAACAAATTGCCCTTCCTCCTCGTTTACCTAATGCCATCGCAAACATTAAAGAAGCG TATGGCGGCAGTAAACAAAATCCGAATGCAATTAAAGCATTTTCTAAAAATATTGAAAAACTGATTGGTAAGCGAGAGTC ATGGGATCTAATCACCTCTCGCGAATTAGCGGCCGCTTTATTAGACAGTAAAAAACGTCGTCGCCGCTCAGATAAACACG AACAGAATTGGCTAAAGATGACGGGGTTTACACTGCGTCCGGGCTTTGGTTACCCTGCGGATGAATGGAAAATTGGCCAA GCGTGGGAAACCTATCAACAAGGGATTCAGTTTGAATCTAAGCAATCTTGGAATGATTGGTGGACGTTCTGGCGTCGAAT TTCGGGTGGATTAAATCAAGAACAACAAGAAACTATTTTGGGTGACATTGCTAAATACTTACACCCGGGCTCTCTGCGCA ACCCAAAAACATTAGAAGATGCGACCAATAAAAGTTACGAAGCGATGGTTCGATTAGCCGCCGCTCTTGAGCATTTAGAT GTCGAAGATAAAACATTACTGTCTACATGGATGCTGGGGCATGCCAAAAATGGCAATCAAGCTCAAGTTCATTGGTGGGC GTTAGGACGTATTTGCTCTCGCTCCCCTTTCTATGGCAGCCAACATAATTTGATCCCTGCGAATCAAGTCACTCAATGGC TTCCTACTTTATTGGAACAAGATTGGAAAGCTCAACCAATGGCAGGGTTTGCAGCCGTCATGATGGCTCGATTAACAGGT GACAGAACACTCGACGTATCCGATGAATTACGCGAAAGCATCATCGATAAATTGAGAAAAAGTCGCTCTCCACAGAGTTG GATTGATTTGGTTTCAAGCCAACAAGCACTAACCGATGCGGACTCTAAACGCCTCTTTGGTGATGCGCTTCCTGCTGGTC TTCGCTTATTAACCTAG
Upstream 100 bases:
>100_bases GTCACCATTATGGGGGCTGAACTCTTTTACTATATGCTCTTTGTTTCTTTATCGCTGTCGCCTTTTATTTCACAGCCATG CTAATCATATTGGAGTTTTT
Downstream 100 bases:
>100_bases CAAAAAACAGGTGAAATATTAATCAATTTTGTCAAAAAGCTGTCAGATTGCTGTTTTTACCTTCAAAAATAGAATGAAAT GCGTATACTAGCGTTATCAC
Product: chaperone heat-shock protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 938; Mature: 937
Protein sequence:
>938_residues MSSSNRYLIGIDLGTTHTVVAYTDISLGIETSPINIFNIDQLIGPGEVARKPLLPSFRYHASNSQVSDNDLTLPWNVKAL DGEIKNAIIGEWARELGSKVEGRQVVSAKSWLSHTKVDRTSDILPWAGAEDVEKVSPIVASASYLNHVRQSWNYHHPDAP MELQEVVVTVPASFDESARSFTIQAAKLAGLNKVILLEEPQAVCYDWYHHHQDTAKDILKNVPLMVVCDVGGGTTDLSLI QARFDKDELSLDRIGVGDHLMLGGDNIDLALAHLAEQRLDSGKKMTAAALTKLIQQTRKTKERLLSANAPESGHITLLGS GSKLLGGSRKVELSKQEVHDIALDGFLPLTDFNDRPNQRQTAVVEFGLPYASDPAISKHLAQFLDNHKEVSAKALGWNDS DLANHQDRAIPVGLLLNGGVFNSPLLANRSVELLNSWKGDSVTSLSNPHPDLAVAYGAVAYGKARHGAQLKIGGGSARSF YLQLEEKNKQPHGLCLLAKGSDEGEEIRMTSRRFSLTLGEPVRFNLLSTTKDQLATSGMITELADSSFVSLPPYVVTLES SKQKETLHANQKDRVEVTLACQFTEVGTIKIECVSVEDDSQRWLVEFEVRNQASNKSHHLAEQIALPPRLPNAIANIKEA YGGSKQNPNAIKAFSKNIEKLIGKRESWDLITSRELAAALLDSKKRRRRSDKHEQNWLKMTGFTLRPGFGYPADEWKIGQ AWETYQQGIQFESKQSWNDWWTFWRRISGGLNQEQQETILGDIAKYLHPGSLRNPKTLEDATNKSYEAMVRLAAALEHLD VEDKTLLSTWMLGHAKNGNQAQVHWWALGRICSRSPFYGSQHNLIPANQVTQWLPTLLEQDWKAQPMAGFAAVMMARLTG DRTLDVSDELRESIIDKLRKSRSPQSWIDLVSSQQALTDADSKRLFGDALPAGLRLLT
Sequences:
>Translated_938_residues MSSSNRYLIGIDLGTTHTVVAYTDISLGIETSPINIFNIDQLIGPGEVARKPLLPSFRYHASNSQVSDNDLTLPWNVKAL DGEIKNAIIGEWARELGSKVEGRQVVSAKSWLSHTKVDRTSDILPWAGAEDVEKVSPIVASASYLNHVRQSWNYHHPDAP MELQEVVVTVPASFDESARSFTIQAAKLAGLNKVILLEEPQAVCYDWYHHHQDTAKDILKNVPLMVVCDVGGGTTDLSLI QARFDKDELSLDRIGVGDHLMLGGDNIDLALAHLAEQRLDSGKKMTAAALTKLIQQTRKTKERLLSANAPESGHITLLGS GSKLLGGSRKVELSKQEVHDIALDGFLPLTDFNDRPNQRQTAVVEFGLPYASDPAISKHLAQFLDNHKEVSAKALGWNDS DLANHQDRAIPVGLLLNGGVFNSPLLANRSVELLNSWKGDSVTSLSNPHPDLAVAYGAVAYGKARHGAQLKIGGGSARSF YLQLEEKNKQPHGLCLLAKGSDEGEEIRMTSRRFSLTLGEPVRFNLLSTTKDQLATSGMITELADSSFVSLPPYVVTLES SKQKETLHANQKDRVEVTLACQFTEVGTIKIECVSVEDDSQRWLVEFEVRNQASNKSHHLAEQIALPPRLPNAIANIKEA YGGSKQNPNAIKAFSKNIEKLIGKRESWDLITSRELAAALLDSKKRRRRSDKHEQNWLKMTGFTLRPGFGYPADEWKIGQ AWETYQQGIQFESKQSWNDWWTFWRRISGGLNQEQQETILGDIAKYLHPGSLRNPKTLEDATNKSYEAMVRLAAALEHLD VEDKTLLSTWMLGHAKNGNQAQVHWWALGRICSRSPFYGSQHNLIPANQVTQWLPTLLEQDWKAQPMAGFAAVMMARLTG DRTLDVSDELRESIIDKLRKSRSPQSWIDLVSSQQALTDADSKRLFGDALPAGLRLLT >Mature_937_residues SSSNRYLIGIDLGTTHTVVAYTDISLGIETSPINIFNIDQLIGPGEVARKPLLPSFRYHASNSQVSDNDLTLPWNVKALD GEIKNAIIGEWARELGSKVEGRQVVSAKSWLSHTKVDRTSDILPWAGAEDVEKVSPIVASASYLNHVRQSWNYHHPDAPM ELQEVVVTVPASFDESARSFTIQAAKLAGLNKVILLEEPQAVCYDWYHHHQDTAKDILKNVPLMVVCDVGGGTTDLSLIQ ARFDKDELSLDRIGVGDHLMLGGDNIDLALAHLAEQRLDSGKKMTAAALTKLIQQTRKTKERLLSANAPESGHITLLGSG SKLLGGSRKVELSKQEVHDIALDGFLPLTDFNDRPNQRQTAVVEFGLPYASDPAISKHLAQFLDNHKEVSAKALGWNDSD LANHQDRAIPVGLLLNGGVFNSPLLANRSVELLNSWKGDSVTSLSNPHPDLAVAYGAVAYGKARHGAQLKIGGGSARSFY LQLEEKNKQPHGLCLLAKGSDEGEEIRMTSRRFSLTLGEPVRFNLLSTTKDQLATSGMITELADSSFVSLPPYVVTLESS KQKETLHANQKDRVEVTLACQFTEVGTIKIECVSVEDDSQRWLVEFEVRNQASNKSHHLAEQIALPPRLPNAIANIKEAY GGSKQNPNAIKAFSKNIEKLIGKRESWDLITSRELAAALLDSKKRRRRSDKHEQNWLKMTGFTLRPGFGYPADEWKIGQA WETYQQGIQFESKQSWNDWWTFWRRISGGLNQEQQETILGDIAKYLHPGSLRNPKTLEDATNKSYEAMVRLAAALEHLDV EDKTLLSTWMLGHAKNGNQAQVHWWALGRICSRSPFYGSQHNLIPANQVTQWLPTLLEQDWKAQPMAGFAAVMMARLTGD RTLDVSDELRESIIDKLRKSRSPQSWIDLVSSQQALTDADSKRLFGDALPAGLRLLT
Specific function: Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by hscB [H]
COG id: COG0443
COG function: function code O; Molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heat shock protein 70 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018181 - InterPro: IPR001023 - InterPro: IPR013126 - InterPro: IPR010236 [H]
Pfam domain/function: PF00012 HSP70 [H]
EC number: NA
Molecular weight: Translated: 104051; Mature: 103920
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSNRYLIGIDLGTTHTVVAYTDISLGIETSPINIFNIDQLIGPGEVARKPLLPSFRYH CCCCCCEEEEEECCCCEEEEEEEEEEECEECCCEEEEEHHHHCCCHHHHHCCCCCCCEEC ASNSQVSDNDLTLPWNVKALDGEIKNAIIGEWARELGSKVEGRQVVSAKSWLSHTKVDRT CCCCCCCCCCEECCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC SDILPWAGAEDVEKVSPIVASASYLNHVRQSWNYHHPDAPMELQEVVVTVPASFDESARS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEECCCCCCCCCCE FTIQAAKLAGLNKVILLEEPQAVCYDWYHHHQDTAKDILKNVPLMVVCDVGGGTTDLSLI EEEEHHHHCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCHHHHH QARFDKDELSLDRIGVGDHLMLGGDNIDLALAHLAEQRLDSGKKMTAAALTKLIQQTRKT HHHCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH KERLLSANAPESGHITLLGSGSKLLGGSRKVELSKQEVHDIALDGFLPLTDFNDRPNQRQ HHHHHCCCCCCCCCEEEEECCCHHCCCCCEEEECHHHHHHHHHCCCEECCCCCCCCCCCC TAVVEFGLPYASDPAISKHLAQFLDNHKEVSAKALGWNDSDLANHQDRAIPVGLLLNGGV EEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCC FNSPLLANRSVELLNSWKGDSVTSLSNPHPDLAVAYGAVAYGKARHGAQLKIGGGSARSF CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCEEEECCCCCEEE YLQLEEKNKQPHGLCLLAKGSDEGEEIRMTSRRFSLTLGEPVRFNLLSTTKDQLATSGMI EEEEECCCCCCCCEEEEECCCCCCCCEEEECCEEEEEECCCEEEEEECCCHHHHHHCCHH TELADSSFVSLPPYVVTLESSKQKETLHANQKDRVEVTLACQFTEVGTIKIECVSVEDDS HHHCCCCCEECCCEEEEECCCCCHHHHCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC QRWLVEFEVRNQASNKSHHLAEQIALPPRLPNAIANIKEAYGGSKQNPNAIKAFSKNIEK CEEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LIGKRESWDLITSRELAAALLDSKKRRRRSDKHEQNWLKMTGFTLRPGFGYPADEWKIGQ HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCEEECCCCCCCCCCCCCCH AWETYQQGIQFESKQSWNDWWTFWRRISGGLNQEQQETILGDIAKYLHPGSLRNPKTLED HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH ATNKSYEAMVRLAAALEHLDVEDKTLLSTWMLGHAKNGNQAQVHWWALGRICSRSPFYGS HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHCCCCCCCC QHNLIPANQVTQWLPTLLEQDWKAQPMAGFAAVMMARLTGDRTLDVSDELRESIIDKLRK CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHH SRSPQSWIDLVSSQQALTDADSKRLFGDALPAGLRLLT CCCCHHHHHHHHCHHHHHCCHHHHHHHHHCCCCCEECC >Mature Secondary Structure SSSNRYLIGIDLGTTHTVVAYTDISLGIETSPINIFNIDQLIGPGEVARKPLLPSFRYH CCCCCEEEEEECCCCEEEEEEEEEEECEECCCEEEEEHHHHCCCHHHHHCCCCCCCEEC ASNSQVSDNDLTLPWNVKALDGEIKNAIIGEWARELGSKVEGRQVVSAKSWLSHTKVDRT CCCCCCCCCCEECCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC SDILPWAGAEDVEKVSPIVASASYLNHVRQSWNYHHPDAPMELQEVVVTVPASFDESARS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEECCCCCCCCCCE FTIQAAKLAGLNKVILLEEPQAVCYDWYHHHQDTAKDILKNVPLMVVCDVGGGTTDLSLI EEEEHHHHCCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCHHHHH QARFDKDELSLDRIGVGDHLMLGGDNIDLALAHLAEQRLDSGKKMTAAALTKLIQQTRKT HHHCCCCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH KERLLSANAPESGHITLLGSGSKLLGGSRKVELSKQEVHDIALDGFLPLTDFNDRPNQRQ HHHHHCCCCCCCCCEEEEECCCHHCCCCCEEEECHHHHHHHHHCCCEECCCCCCCCCCCC TAVVEFGLPYASDPAISKHLAQFLDNHKEVSAKALGWNDSDLANHQDRAIPVGLLLNGGV EEEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCC FNSPLLANRSVELLNSWKGDSVTSLSNPHPDLAVAYGAVAYGKARHGAQLKIGGGSARSF CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCEEEECCCCCEEE YLQLEEKNKQPHGLCLLAKGSDEGEEIRMTSRRFSLTLGEPVRFNLLSTTKDQLATSGMI EEEEECCCCCCCCEEEEECCCCCCCCEEEECCEEEEEECCCEEEEEECCCHHHHHHCCHH TELADSSFVSLPPYVVTLESSKQKETLHANQKDRVEVTLACQFTEVGTIKIECVSVEDDS HHHCCCCCEECCCEEEEECCCCCHHHHCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCC QRWLVEFEVRNQASNKSHHLAEQIALPPRLPNAIANIKEAYGGSKQNPNAIKAFSKNIEK CEEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LIGKRESWDLITSRELAAALLDSKKRRRRSDKHEQNWLKMTGFTLRPGFGYPADEWKIGQ HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCEEECCCCCCCCCCCCCCH AWETYQQGIQFESKQSWNDWWTFWRRISGGLNQEQQETILGDIAKYLHPGSLRNPKTLED HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH ATNKSYEAMVRLAAALEHLDVEDKTLLSTWMLGHAKNGNQAQVHWWALGRICSRSPFYGS HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHCCCCCCCC QHNLIPANQVTQWLPTLLEQDWKAQPMAGFAAVMMARLTGDRTLDVSDELRESIIDKLRK CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHH SRSPQSWIDLVSSQQALTDADSKRLFGDALPAGLRLLT CCCCHHHHHHHHCHHHHHCCHHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA