Click here to switch to the map view.

The map label for this gene is hpc [H]

Identifier: 209694886

GI number: 209694886

Start: 1475219

End: 1475737

Strand: Direct

Name: hpc [H]

Synonym: VSAL_I1357

Alternate gene names: 209694886

Gene position: 1475219-1475737 (Clockwise)

Preceding gene: 209694885

Following gene: 209694887

Centisome position: 44.37

GC content: 43.55

Gene sequence:

>519_bases
ATGCCAACTCCAGCATATATGTCAATTAAAGGCGAAACTCAAGGCGATATCACTAAAGATGCGTACTCAGCAGATTCAGT
CGGTAATACATGGCAGGAAGCTCATATTGATGAGTTCCTAGTTCAAGAGCTTGATCATGTATTAACGGTTCCACGTGATC
CACAAAGTGGTCAACCTACTGGTCAACGTGTTCACCGTCCAGTTATCGTAACTAAGCAACAAGACCGCTGTTCTCCATTA
TTATTCAACTCTTTAGTCTCTGGTGAGAAACTGCCTGAATGTAGCATCAACTTCTACCGTACCTCTATTTCTGGTAAGCA
AGAGCATTACTACACAATCAAACTGATTGATGCACTATTGGTTGATATGCAAACGCGTATGGCTCATTGCCAAGATGCTG
CTACTTCTGATCGTGTAACGGAAGAAGTGCTTAAGTTCACTTACCGTGCCATTGAAGTAACTCACGAAACGTGTGGTACG
GCAGGTGATGATGATTGGCGTAAGCCACGCGAAGCGTAA

Upstream 100 bases:

>100_bases
GAATTAATTGATTTTAATATTTGGCATCTTAATTGCTCTATTCAATGTAACTCGTGACGTTCACGGTTCTAAATAGAATT
CAATATTAAGGAATAAAGCC

Downstream 100 bases:

>100_bases
TTGCCTCGAAAATCATTTATAAAAACTAGGGCCTCATGTTGGCCCTATTTGTCGTTATACTTATCAGGTGAATACAATGG
CTAATGAGGTCGAGTTTAAG

Product: secreted protein Hcp-2 (haemolysin co-regulated protein)

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MPTPAYMSIKGETQGDITKDAYSADSVGNTWQEAHIDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPVIVTKQQDRCSPL
LFNSLVSGEKLPECSINFYRTSISGKQEHYYTIKLIDALLVDMQTRMAHCQDAATSDRVTEEVLKFTYRAIEVTHETCGT
AGDDDWRKPREA

Sequences:

>Translated_172_residues
MPTPAYMSIKGETQGDITKDAYSADSVGNTWQEAHIDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPVIVTKQQDRCSPL
LFNSLVSGEKLPECSINFYRTSISGKQEHYYTIKLIDALLVDMQTRMAHCQDAATSDRVTEEVLKFTYRAIEVTHETCGT
AGDDDWRKPREA
>Mature_171_residues
PTPAYMSIKGETQGDITKDAYSADSVGNTWQEAHIDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPVIVTKQQDRCSPLL
FNSLVSGEKLPECSINFYRTSISGKQEHYYTIKLIDALLVDMQTRMAHCQDAATSDRVTEEVLKFTYRAIEVTHETCGTA
GDDDWRKPREA

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 19416; Mature: 19285

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPAYMSIKGETQGDITKDAYSADSVGNTWQEAHIDEFLVQELDHVLTVPRDPQSGQPT
CCCCCEEEECCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GQRVHRPVIVTKQQDRCSPLLFNSLVSGEKLPECSINFYRTSISGKQEHYYTIKLIDALL
CHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
VDMQTRMAHCQDAATSDRVTEEVLKFTYRAIEVTHETCGTAGDDDWRKPREA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTPAYMSIKGETQGDITKDAYSADSVGNTWQEAHIDEFLVQELDHVLTVPRDPQSGQPT
CCCCEEEECCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GQRVHRPVIVTKQQDRCSPLLFNSLVSGEKLPECSINFYRTSISGKQEHYYTIKLIDALL
CHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
VDMQTRMAHCQDAATSDRVTEEVLKFTYRAIEVTHETCGTAGDDDWRKPREA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]