Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694887
Identifier: 209694887
GI number: 209694887
Start: 1475814
End: 1478078
Strand: Direct
Name: 209694887
Synonym: VSAL_I1358
Alternate gene names: NA
Gene position: 1475814-1478078 (Clockwise)
Preceding gene: 209694886
Following gene: 209694888
Centisome position: 44.38
GC content: 43.31
Gene sequence:
>2265_bases ATGGCTAATGAGGTCGAGTTTAAGTTTGAAGTCCTTGGCACGAATCATGAATTTCGTGTTGAGAGTTTCAATGTGGTCGA AGAGGTATCCCAACCTTTTAAAATAACCTTGTCGTTATTGTCATTAGACCCTGATATAGCGTTTGATGTATTAAGCCGAA AACCCGCATTATTAACCGTTCTTGGGCAAGGAATGAATGCCGGACGATTATTTCATGGTGTCGTAAATGAAGTTCGGTAT TTAGGCGCAGGTCGTCGTTTCTCTCATTATCAAATTACGCTCGTACCTCAACTGTGGTTTTTAACCCAACGCCAAGATTG TCGTATTTTCCAAGATAAGTCGATTGTTGATATTTTAACTGAAGTGCTCGATGGGGCGTCAGTGACTGATTATCGCTTTG AACTGTCTAATACCTATCCCAACCAAGAATACTTACTTCAATATCGTGAAACTGACAGTCATTTTGTTCAGCGTTTATTA GCAGAGCACGGTTTATGGTATTACTTCGAACATACTACAAGTAACCATAGCATGGTGATTATTGATAAAAATGATGCCAT TCCAGAGTTAATTAGTACTCCTCTAAACGCGTCTTATATTGGCCCTTTGGTGTACCAATCTGAAGGAGGTGGTAATGCTG ACAGAGAGCATATATTTGAGTTAAGCAGCTATAACCGTGTTCGTACTGGTCATGTAATTCAAACCGATTATAACTACGAT CAACCCCGCATCCCACAACAAGTGCAACAACAGGGTGATCGAGATACTGATTTAGCATTCTTTGATTACCCAGGACGCTA TGGGGAAAGCGTAGAAGGCCAACAACGTAGCAATTACCTTATCGCTGATCATCAGGTTGAAAATCATCAAATTGAAGCCG AAAGTAACATTATGCGTTTAACTGCTGGTTATAGTTTTGATTTGGCAAAGCACCCAAGAAACGCAATCAATCGAGATTAC ACGCTCACAGCGATAACGCACAGTGGTTATAACCCACAAGTGCACGAAGAAGAATCAAGTGGTCTGCCGACGACGTATCA AAACTATTTTAATTGTATTCCTCGCGATGTTGGCTATAAAGCACCTAAATTAGCCGCCCCAGTGGTTGATGGCCCTCAGA CGGCAGTCGTGGTTGGCCCCGCAGGAGAAGAAATATATACCGATCCAATGGGACGTATTAAAGTCCAATTTCACTGGGAT CGTTATGGTAACAACGATGAGCATTCAGGTTGTTGGCTTCGTGTTAGTCAATCGATGGCCGCGCCAACGTGGGGCGCGGT GTATTTACCGAGAATAGGGCACGAAGTGGTGGTGACCTTCTTAGAGGGAGATCCAGACAGACCCTTAGTGACAGGTGCGG TATACAACGGCTTACACACGCCCCCTTATGCCTTGCCAGAGCATAAAACCAAAACGGTATTTCGGACTCAAACCCACAAA GGGGAAGGGTACAACGAAATGTCGTTTGAAGACGAAGCCAATCAAGAAGAAGTTTATTTTCATGCTCAGAAAGACATGAG AACTAAGGTTCTAAATAACCGATTCAGAACCATAGGGAATGATGAAGAGTTAGAAGTTGGACGTAACCAAGAAAACATCA TTAACAAAGACAGAAAAGAAACCATAGAAGGCCATAAAACATCAATAACAAACCAAACCTTCTCAGAAACCGTCGAGCAA GACGTAACGGTTAAATACAACGCCAACATAGAAAAGAGCGTGGCTGTTGAACAGACGTTGACAATCTACGAAAACCGACA GAGTACGATAGGTAAGAACGACGAACTCACGATTAAAGGCGAACAAAGCCGCATTACTATGGGAGCAAGTAGCAGTGATA TTAGCGCTGACGATACGCTAACCGTTGGTCAGAATCTCACAATAGAAGTCGGAAATAATGCATCCATTAAATCGGATGCT GACCATACCATAATCAGTGCCGATGAAATTACGGCTCAGGTGGGAAGCTCGGGTTTTATTCTAAAAAATAACGGCACCAT TACCTTGTATGGCTCAGATATTACGGTTGATGGCTCTGGCTCGGTCGCCTTGGTTGGGGGAAATGTTGCGATTAACCCTG GCGCAGCATCTAGTCAAAGTAGCAGTGTAAGCGCGAACCTTCCTCGTACCTTCTCAATGTCACCATTAGCATCAACCAAA CCAGTGATGAATTCAGCGGCGTACAGTGAAATGGTTGAAGATGGCGCATTAATGAAAGAGTTATGCCAATGTGGTAAGGA GGGCATATGCAAGCTGCACAGCTAA
Upstream 100 bases:
>100_bases TGGCGTAAGCCACGCGAAGCGTAATTGCCTCGAAAATCATTTATAAAAACTAGGGCCTCATGTTGGCCCTATTTGTCGTT ATACTTATCAGGTGAATACA
Downstream 100 bases:
>100_bases ATAATGAATGGCGAGTAAATTCTGTTGAAGTGCCATTATTTTCTGCATCAGAAAGTATTTATGCATTTATTGAACCGGAG TTATGGCCTGAGTGGAATGC
Product: VgrG preotein, VgrG-2
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VgrG Protein; Rhs-Family Protein; Rhs Family Protein; Rhs Element Vgr Family Protein; Rhs Accessory Genetic Element; VgrG-Like Protein; RHS Accessory Genetic Element; Vgr Protein; Two Component LuxR Family Transcriptional Regulator; Conserved Hypothethical Protein; Rhs Element Vgr Family; Vgr-Related Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Element Vgr Protein Subfamily; Rhs Element Protein; VrgG Protein; Rhs Protein; Rhs/Vgr-Family Protein; Fimbrial Operon Related Protein; VgrG Family T6SS G; Vgr Family Type VI Secretion System
Number of amino acids: Translated: 754; Mature: 753
Protein sequence:
>754_residues MANEVEFKFEVLGTNHEFRVESFNVVEEVSQPFKITLSLLSLDPDIAFDVLSRKPALLTVLGQGMNAGRLFHGVVNEVRY LGAGRRFSHYQITLVPQLWFLTQRQDCRIFQDKSIVDILTEVLDGASVTDYRFELSNTYPNQEYLLQYRETDSHFVQRLL AEHGLWYYFEHTTSNHSMVIIDKNDAIPELISTPLNASYIGPLVYQSEGGGNADREHIFELSSYNRVRTGHVIQTDYNYD QPRIPQQVQQQGDRDTDLAFFDYPGRYGESVEGQQRSNYLIADHQVENHQIEAESNIMRLTAGYSFDLAKHPRNAINRDY TLTAITHSGYNPQVHEEESSGLPTTYQNYFNCIPRDVGYKAPKLAAPVVDGPQTAVVVGPAGEEIYTDPMGRIKVQFHWD RYGNNDEHSGCWLRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHTPPYALPEHKTKTVFRTQTHK GEGYNEMSFEDEANQEEVYFHAQKDMRTKVLNNRFRTIGNDEELEVGRNQENIINKDRKETIEGHKTSITNQTFSETVEQ DVTVKYNANIEKSVAVEQTLTIYENRQSTIGKNDELTIKGEQSRITMGASSSDISADDTLTVGQNLTIEVGNNASIKSDA DHTIISADEITAQVGSSGFILKNNGTITLYGSDITVDGSGSVALVGGNVAINPGAASSQSSSVSANLPRTFSMSPLASTK PVMNSAAYSEMVEDGALMKELCQCGKEGICKLHS
Sequences:
>Translated_754_residues MANEVEFKFEVLGTNHEFRVESFNVVEEVSQPFKITLSLLSLDPDIAFDVLSRKPALLTVLGQGMNAGRLFHGVVNEVRY LGAGRRFSHYQITLVPQLWFLTQRQDCRIFQDKSIVDILTEVLDGASVTDYRFELSNTYPNQEYLLQYRETDSHFVQRLL AEHGLWYYFEHTTSNHSMVIIDKNDAIPELISTPLNASYIGPLVYQSEGGGNADREHIFELSSYNRVRTGHVIQTDYNYD QPRIPQQVQQQGDRDTDLAFFDYPGRYGESVEGQQRSNYLIADHQVENHQIEAESNIMRLTAGYSFDLAKHPRNAINRDY TLTAITHSGYNPQVHEEESSGLPTTYQNYFNCIPRDVGYKAPKLAAPVVDGPQTAVVVGPAGEEIYTDPMGRIKVQFHWD RYGNNDEHSGCWLRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHTPPYALPEHKTKTVFRTQTHK GEGYNEMSFEDEANQEEVYFHAQKDMRTKVLNNRFRTIGNDEELEVGRNQENIINKDRKETIEGHKTSITNQTFSETVEQ DVTVKYNANIEKSVAVEQTLTIYENRQSTIGKNDELTIKGEQSRITMGASSSDISADDTLTVGQNLTIEVGNNASIKSDA DHTIISADEITAQVGSSGFILKNNGTITLYGSDITVDGSGSVALVGGNVAINPGAASSQSSSVSANLPRTFSMSPLASTK PVMNSAAYSEMVEDGALMKELCQCGKEGICKLHS >Mature_753_residues ANEVEFKFEVLGTNHEFRVESFNVVEEVSQPFKITLSLLSLDPDIAFDVLSRKPALLTVLGQGMNAGRLFHGVVNEVRYL GAGRRFSHYQITLVPQLWFLTQRQDCRIFQDKSIVDILTEVLDGASVTDYRFELSNTYPNQEYLLQYRETDSHFVQRLLA EHGLWYYFEHTTSNHSMVIIDKNDAIPELISTPLNASYIGPLVYQSEGGGNADREHIFELSSYNRVRTGHVIQTDYNYDQ PRIPQQVQQQGDRDTDLAFFDYPGRYGESVEGQQRSNYLIADHQVENHQIEAESNIMRLTAGYSFDLAKHPRNAINRDYT LTAITHSGYNPQVHEEESSGLPTTYQNYFNCIPRDVGYKAPKLAAPVVDGPQTAVVVGPAGEEIYTDPMGRIKVQFHWDR YGNNDEHSGCWLRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHTPPYALPEHKTKTVFRTQTHKG EGYNEMSFEDEANQEEVYFHAQKDMRTKVLNNRFRTIGNDEELEVGRNQENIINKDRKETIEGHKTSITNQTFSETVEQD VTVKYNANIEKSVAVEQTLTIYENRQSTIGKNDELTIKGEQSRITMGASSSDISADDTLTVGQNLTIEVGNNASIKSDAD HTIISADEITAQVGSSGFILKNNGTITLYGSDITVDGSGSVALVGGNVAINPGAASSQSSSVSANLPRTFSMSPLASTKP VMNSAAYSEMVEDGALMKELCQCGKEGICKLHS
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84158; Mature: 84027
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANEVEFKFEVLGTNHEFRVESFNVVEEVSQPFKITLSLLSLDPDIAFDVLSRKPALLTV CCCCEEEEEEEECCCCEEEEECHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCEEEEE LGQGMNAGRLFHGVVNEVRYLGAGRRFSHYQITLVPQLWFLTQRQDCRIFQDKSIVDILT ECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCEEECCCCHHHHHH EVLDGASVTDYRFELSNTYPNQEYLLQYRETDSHFVQRLLAEHGLWYYFEHTTSNHSMVI HHHCCCCEEEEEEEECCCCCCHHHEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCEEEE IDKNDAIPELISTPLNASYIGPLVYQSEGGGNADREHIFELSSYNRVRTGHVIQTDYNYD EECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCEEECCCEEEECCCCC QPRIPQQVQQQGDRDTDLAFFDYPGRYGESVEGQQRSNYLIADHQVENHQIEAESNIMRL CCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEE TAGYSFDLAKHPRNAINRDYTLTAITHSGYNPQVHEEESSGLPTTYQNYFNCIPRDVGYK ECCCEEEHHHCCHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHCCCC APKLAAPVVDGPQTAVVVGPAGEEIYTDPMGRIKVQFHWDRYGNNDEHSGCWLRVSQSMA CCCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCC APTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHTPPYALPEHKTKTVFRTQTHK CCCCCEEECCCCCCEEEEEEECCCCCCCEEEHHHHCCCCCCCCCCCCCCCCEEEEEECCC GEGYNEMSFEDEANQEEVYFHAQKDMRTKVLNNRFRTIGNDEELEVGRNQENIINKDRKE CCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHCCCHHH TIEGHKTSITNQTFSETVEQDVTVKYNANIEKSVAVEQTLTIYENRQSTIGKNDELTIKG HHCCCHHCCCCHHHHHHHHCCEEEEECCCCCHHHHHHHEEEEEECCHHHCCCCCEEEEEC EQSRITMGASSSDISADDTLTVGQNLTIEVGNNASIKSDADHTIISADEITAQVGSSGFI CCCEEEECCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCEE LKNNGTITLYGSDITVDGSGSVALVGGNVAINPGAASSQSSSVSANLPRTFSMSPLASTK EECCCEEEEEECEEEECCCCCEEEECCCEEECCCCCCCCCCCEECCCCCEECCCCCCCCC PVMNSAAYSEMVEDGALMKELCQCGKEGICKLHS HHHHHHHHHHHHHCCHHHHHHHHCCCCCCEECCC >Mature Secondary Structure ANEVEFKFEVLGTNHEFRVESFNVVEEVSQPFKITLSLLSLDPDIAFDVLSRKPALLTV CCCEEEEEEEECCCCEEEEECHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCEEEEE LGQGMNAGRLFHGVVNEVRYLGAGRRFSHYQITLVPQLWFLTQRQDCRIFQDKSIVDILT ECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCEEECCCCHHHHHH EVLDGASVTDYRFELSNTYPNQEYLLQYRETDSHFVQRLLAEHGLWYYFEHTTSNHSMVI HHHCCCCEEEEEEEECCCCCCHHHEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCEEEE IDKNDAIPELISTPLNASYIGPLVYQSEGGGNADREHIFELSSYNRVRTGHVIQTDYNYD EECCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCEEECCCEEEECCCCC QPRIPQQVQQQGDRDTDLAFFDYPGRYGESVEGQQRSNYLIADHQVENHQIEAESNIMRL CCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEE TAGYSFDLAKHPRNAINRDYTLTAITHSGYNPQVHEEESSGLPTTYQNYFNCIPRDVGYK ECCCEEEHHHCCHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHCCCC APKLAAPVVDGPQTAVVVGPAGEEIYTDPMGRIKVQFHWDRYGNNDEHSGCWLRVSQSMA CCCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCC APTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHTPPYALPEHKTKTVFRTQTHK CCCCCEEECCCCCCEEEEEEECCCCCCCEEEHHHHCCCCCCCCCCCCCCCCEEEEEECCC GEGYNEMSFEDEANQEEVYFHAQKDMRTKVLNNRFRTIGNDEELEVGRNQENIINKDRKE CCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHCCCHHH TIEGHKTSITNQTFSETVEQDVTVKYNANIEKSVAVEQTLTIYENRQSTIGKNDELTIKG HHCCCHHCCCCHHHHHHHHCCEEEEECCCCCHHHHHHHEEEEEECCHHHCCCCCEEEEEC EQSRITMGASSSDISADDTLTVGQNLTIEVGNNASIKSDADHTIISADEITAQVGSSGFI CCCEEEECCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCEE LKNNGTITLYGSDITVDGSGSVALVGGNVAINPGAASSQSSSVSANLPRTFSMSPLASTK EECCCEEEEEECEEEECCCCCEEEECCCEEECCCCCCCCCCCEECCCCCEECCCCCCCCC PVMNSAAYSEMVEDGALMKELCQCGKEGICKLHS HHHHHHHHHHHHHCCHHHHHHHHCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA