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The map label for this gene is ychA [C]

Identifier: 209694375

GI number: 209694375

Start: 878836

End: 879645

Strand: Direct

Name: ychA [C]

Synonym: VSAL_I0793

Alternate gene names: 209694375

Gene position: 878836-879645 (Clockwise)

Preceding gene: 209694374

Following gene: 209694376

Centisome position: 26.43

GC content: 38.27

Gene sequence:

>810_bases
ATGTTTCAGTTGCTTGATGAAAATTTAGAAGACCTTAGCCTTGTTGAAGGTGCATTAGCTCTAAATTTAGCCATTAATCC
AGATATACAAAGACAGCGTGTTGATATTAAACTGCGAGAAATGTGTATTGAAGCAGAGCAAACGCTTGTTCACGAACCAA
CTGATGAGCAGCGTTTAGAGCGATTAATTCAACTGTTTTATGTTGAGTGGGGCTACCAAGGTGATGTTTATACGTATTTT
AATTCAGAGAATGCGTTTATTGATCATGTGCTTGAAAGTAAAAAAGGGATCCCGGTAACGTTAGGGGCGATTTTTTTACA
TATTTGTCAGTATGTGAATTTACCTGTGAGTGCGATTAATTTCCCCACTCAGTTAGTTTTACAGGTTGAATGGCCAAATC
AAGCACCCCGTTACTTAAACCCTTTTGATGGACAATATGTTAGTACGCATTTAATGACGGCATGGCTAATTGGCTATGGT
GGACCATTGGCTGAGATCTTGCCGATACATTTAGAGAAAATAGATAATCCAACATTAGTCGGCCGTTTATTAGCGGTGAT
TAAAACGGCATGCATTAGAGAGCGTAAATTTTCATTTGCTTTAACTTGCAGTGATCTCGCATTGAATGTCGTGCCCGATG
ATCCTTTTGAAATTCGTGATAGAGGCTTAATCTATCAACAGCTACACTGTAATGATGTAGCGAAAACCGATTTAATCTAT
TTTATTGAACAGTGCCCTAATGATCCATCGACCTTGATGATGAAAGAGCAAGTTCAATTATTAGAACAACACCCTACCGT
TCTCCATTAA

Upstream 100 bases:

>100_bases
AAAACAAAGTATTTAAAACATTTGCCTTTCTTGGCGCATTAGGTTGGTTAATGGTTGCAGCTAATATTGCGATGACGAAA
GCAACATTTCTGGGGTAAAT

Downstream 100 bases:

>100_bases
GAGTGAAGATAATGCAAAATCAAAAAACAGTAAAAATTGGCAATATCGATGTAGCAAATGATAAGCCGTTTACCTTATTT
GCAGGTATGAATGTATTAGA

Product: protein SirB1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MFQLLDENLEDLSLVEGALALNLAINPDIQRQRVDIKLREMCIEAEQTLVHEPTDEQRLERLIQLFYVEWGYQGDVYTYF
NSENAFIDHVLESKKGIPVTLGAIFLHICQYVNLPVSAINFPTQLVLQVEWPNQAPRYLNPFDGQYVSTHLMTAWLIGYG
GPLAEILPIHLEKIDNPTLVGRLLAVIKTACIRERKFSFALTCSDLALNVVPDDPFEIRDRGLIYQQLHCNDVAKTDLIY
FIEQCPNDPSTLMMKEQVQLLEQHPTVLH

Sequences:

>Translated_269_residues
MFQLLDENLEDLSLVEGALALNLAINPDIQRQRVDIKLREMCIEAEQTLVHEPTDEQRLERLIQLFYVEWGYQGDVYTYF
NSENAFIDHVLESKKGIPVTLGAIFLHICQYVNLPVSAINFPTQLVLQVEWPNQAPRYLNPFDGQYVSTHLMTAWLIGYG
GPLAEILPIHLEKIDNPTLVGRLLAVIKTACIRERKFSFALTCSDLALNVVPDDPFEIRDRGLIYQQLHCNDVAKTDLIY
FIEQCPNDPSTLMMKEQVQLLEQHPTVLH
>Mature_269_residues
MFQLLDENLEDLSLVEGALALNLAINPDIQRQRVDIKLREMCIEAEQTLVHEPTDEQRLERLIQLFYVEWGYQGDVYTYF
NSENAFIDHVLESKKGIPVTLGAIFLHICQYVNLPVSAINFPTQLVLQVEWPNQAPRYLNPFDGQYVSTHLMTAWLIGYG
GPLAEILPIHLEKIDNPTLVGRLLAVIKTACIRERKFSFALTCSDLALNVVPDDPFEIRDRGLIYQQLHCNDVAKTDLIY
FIEQCPNDPSTLMMKEQVQLLEQHPTVLH

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=269, Percent_Identity=36.8029739776952, Blast_Score=185, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30862; Mature: 30862

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQLLDENLEDLSLVEGALALNLAINPDIQRQRVDIKLREMCIEAEQTLVHEPTDEQRLE
CCCCHHCCHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLIQLFYVEWGYQGDVYTYFNSENAFIDHVLESKKGIPVTLGAIFLHICQYVNLPVSAIN
HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHCC
FPTQLVLQVEWPNQAPRYLNPFDGQYVSTHLMTAWLIGYGGPLAEILPIHLEKIDNPTLV
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
GRLLAVIKTACIRERKFSFALTCSDLALNVVPDDPFEIRDRGLIYQQLHCNDVAKTDLIY
HHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCHHHHCCCEEEEECCCCCHHHHHHHH
FIEQCPNDPSTLMMKEQVQLLEQHPTVLH
HHHHCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFQLLDENLEDLSLVEGALALNLAINPDIQRQRVDIKLREMCIEAEQTLVHEPTDEQRLE
CCCCHHCCHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RLIQLFYVEWGYQGDVYTYFNSENAFIDHVLESKKGIPVTLGAIFLHICQYVNLPVSAIN
HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHCC
FPTQLVLQVEWPNQAPRYLNPFDGQYVSTHLMTAWLIGYGGPLAEILPIHLEKIDNPTLV
CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH
GRLLAVIKTACIRERKFSFALTCSDLALNVVPDDPFEIRDRGLIYQQLHCNDVAKTDLIY
HHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCHHHHCCCEEEEECCCCCHHHHHHHH
FIEQCPNDPSTLMMKEQVQLLEQHPTVLH
HHHHCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]