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The map label for this gene is sirB2 [H]

Identifier: 209694374

GI number: 209694374

Start: 878453

End: 878833

Strand: Direct

Name: sirB2 [H]

Synonym: VSAL_I0792

Alternate gene names: 209694374

Gene position: 878453-878833 (Clockwise)

Preceding gene: 209694373

Following gene: 209694375

Centisome position: 26.42

GC content: 37.27

Gene sequence:

>381_bases
ATGTATACCGCTGTTAAACACATTCACTTATTTATGATCGCTTGTAGCGTACTATTATTTATCGTTCGTTATGCGTTAAT
GATGGTTGATTCCGATCTTCGTAATAAAGCTTTTTTTAAACGAGTGCCTCACGTTGTTGATACGGCAATGCTATTAAGTG
GCGTTGCACTTATTTTTATTACTGGATTCATTCCATTTACAGGTGCGGCTCCTTGGTTAACTGAGAAATTGACTTGTGTT
TTGGTTTATATCGCTCTGGGGTTTGTCACTCTAGGAAACAGTAAAAACAAAGTATTTAAAACATTTGCCTTTCTTGGCGC
ATTAGGTTGGTTAATGGTTGCAGCTAATATTGCGATGACGAAAGCAACATTTCTGGGGTAA

Upstream 100 bases:

>100_bases
ATATGGCTTCATTAATGTTAAAACAGAACAAGATTACGCTGGCAATGATCGAGTTACATTAGGTCAGTGGATCACAAACA
CAGAGAATAAAGGATAATTC

Downstream 100 bases:

>100_bases
ATATGTTTCAGTTGCTTGATGAAAATTTAGAAGACCTTAGCCTTGTTGAAGGTGCATTAGCTCTAAATTTAGCCATTAAT
CCAGATATACAAAGACAGCG

Product: protein SirB, invasion gene expression up-regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MYTAVKHIHLFMIACSVLLFIVRYALMMVDSDLRNKAFFKRVPHVVDTAMLLSGVALIFITGFIPFTGAAPWLTEKLTCV
LVYIALGFVTLGNSKNKVFKTFAFLGALGWLMVAANIAMTKATFLG

Sequences:

>Translated_126_residues
MYTAVKHIHLFMIACSVLLFIVRYALMMVDSDLRNKAFFKRVPHVVDTAMLLSGVALIFITGFIPFTGAAPWLTEKLTCV
LVYIALGFVTLGNSKNKVFKTFAFLGALGWLMVAANIAMTKATFLG
>Mature_126_residues
MYTAVKHIHLFMIACSVLLFIVRYALMMVDSDLRNKAFFKRVPHVVDTAMLLSGVALIFITGFIPFTGAAPWLTEKLTCV
LVYIALGFVTLGNSKNKVFKTFAFLGALGWLMVAANIAMTKATFLG

Specific function: Unknown

COG id: COG3094

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787464, Length=121, Percent_Identity=39.6694214876033, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007360 [H]

Pfam domain/function: PF04247 SirB [H]

EC number: NA

Molecular weight: Translated: 13898; Mature: 13898

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTAVKHIHLFMIACSVLLFIVRYALMMVDSDLRNKAFFKRVPHVVDTAMLLSGVALIFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGFIPFTGAAPWLTEKLTCVLVYIALGFVTLGNSKNKVFKTFAFLGALGWLMVAANIAMT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KATFLG
HHHHCC
>Mature Secondary Structure
MYTAVKHIHLFMIACSVLLFIVRYALMMVDSDLRNKAFFKRVPHVVDTAMLLSGVALIFI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGFIPFTGAAPWLTEKLTCVLVYIALGFVTLGNSKNKVFKTFAFLGALGWLMVAANIAMT
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KATFLG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7543480; 8905232; 9278503 [H]