Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694347
Identifier: 209694347
GI number: 209694347
Start: 848387
End: 849481
Strand: Reverse
Name: 209694347
Synonym: VSAL_I0759
Alternate gene names: NA
Gene position: 849481-848387 (Counterclockwise)
Preceding gene: 209694348
Following gene: 209694345
Centisome position: 25.55
GC content: 42.47
Gene sequence:
>1095_bases ATGCAGCGACAAAAGGGACTAAAACTCGTGGCAAAGGCTAGACAGAACAAAGCATTCGACATACTAACGTATTCAGTTGC ACCCGGTGAAAGAAAGGTCATTGAGATTGAAGCCGCAAAGCTTTATACCCACTCACCTTTATCTATCCCTGTAGAAATCA TTAATGGCCAGCATGCTGGCCCAATCCTGATGGTCAATGCGGCCATTCATGGTGATGAGCTCAATGGGGTTGAAATTGTT CGACAGTTAATCAATAACATTGACCCAAAAACCCTAAAAGGCACTTTAATTGCAGTGCCTATTGTTAACGTTTTTGGTTT CATTCATAAATCTCGTTATCTACCCGATCGCCGAGATTTAAACCGTTGCTTCCCAGGTTCAGAAAAAGGCTCTTTGGCAT CACGCATGGCAAATACCTTTTTCACCCAAATAGCAAAACGTTGTGATTATATTGTTGACTTGCACACCGGAGCGATTCAT CGAACAAACTTACCTCAAATTCGTGCCAATCTAAGTAATCCTGAAACGTTACGAATTGCAAAAGCATTCGCAACACCATT GATTGTAGATTCGCCATTACGAGATGGTTCGTTACGCAGTGAAGCTGAACGTTGCGGTATTCCAGTATTAACATACGAAG CCGGTGAAGCATTGCGCTTTGAACCGATAGCGATCAATGCTGGATATGTGGGTGTACAACGAGTAATGCAATCTATTGGT ATGTTAAAAGCCAGTAGAAAGCGCTTACCAACAGCCATTATTGCGAAATCAACTGGCTGGCTTAGAGCAGAAAGCGACGG TATCTTACGTACTATCGTGACACTCGGTGAGCAAGTTGAAAAAGATCAAGTTCTTGCTTATATCAGTGCGCCACTTGGCC ACGGTGAGATCGAGATTATCGCACATAAAGGTGGCATCGTTATTGGCCAACAAACATTACCATTAGTTAATGAAGGGGAC GCTATTTTCAATTTAGCTTACTTTTCTGAAGATGATGAGATGGTCGGTCAAACAGTTGAAACGTACATCGATGAAATGAT TGATGCCGATACTGATCAACTAACGAATGGGCAGATCACAACATCTACCCTTTGA
Upstream 100 bases:
>100_bases CCATTAGTTATGGAAGTGAACTCTTCACCTGGCTTAGAAGGCATTGAAGCCGCTACAGGTAAAGACGTTGCTGGTTTAAT TGTTGATTTTATTGAGAAAA
Downstream 100 bases:
>100_bases TATTTCGATACCAAAAACAAAAATAAGAGAGGTTCGCCTCTCTTATTTTATCCACAATATTTACCGGCATTACTGAACAC CAATAATTTCGTATTGTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Deacylase; Ectoine Utilization Protein EutE; Succinylglutamate Desuccinylase / Aspartoacylase Family; Succinate Dehydrogenase Subunit Sdh; Succinate Dehydrogenase Subunit; Succinylglutamatedesuccinylase/Aspartoacylase; Deacylase-Like; Succinylglutamate Desuccinylase; Serine Protease; Aminoacylase-2/Carboxypeptidase-Z Family Hydrolase; AstE/AspA Family Protein; N-Acetyl Diamonbutyric Acid Acylase
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MQRQKGLKLVAKARQNKAFDILTYSVAPGERKVIEIEAAKLYTHSPLSIPVEIINGQHAGPILMVNAAIHGDELNGVEIV RQLINNIDPKTLKGTLIAVPIVNVFGFIHKSRYLPDRRDLNRCFPGSEKGSLASRMANTFFTQIAKRCDYIVDLHTGAIH RTNLPQIRANLSNPETLRIAKAFATPLIVDSPLRDGSLRSEAERCGIPVLTYEAGEALRFEPIAINAGYVGVQRVMQSIG MLKASRKRLPTAIIAKSTGWLRAESDGILRTIVTLGEQVEKDQVLAYISAPLGHGEIEIIAHKGGIVIGQQTLPLVNEGD AIFNLAYFSEDDEMVGQTVETYIDEMIDADTDQLTNGQITTSTL
Sequences:
>Translated_364_residues MQRQKGLKLVAKARQNKAFDILTYSVAPGERKVIEIEAAKLYTHSPLSIPVEIINGQHAGPILMVNAAIHGDELNGVEIV RQLINNIDPKTLKGTLIAVPIVNVFGFIHKSRYLPDRRDLNRCFPGSEKGSLASRMANTFFTQIAKRCDYIVDLHTGAIH RTNLPQIRANLSNPETLRIAKAFATPLIVDSPLRDGSLRSEAERCGIPVLTYEAGEALRFEPIAINAGYVGVQRVMQSIG MLKASRKRLPTAIIAKSTGWLRAESDGILRTIVTLGEQVEKDQVLAYISAPLGHGEIEIIAHKGGIVIGQQTLPLVNEGD AIFNLAYFSEDDEMVGQTVETYIDEMIDADTDQLTNGQITTSTL >Mature_364_residues MQRQKGLKLVAKARQNKAFDILTYSVAPGERKVIEIEAAKLYTHSPLSIPVEIINGQHAGPILMVNAAIHGDELNGVEIV RQLINNIDPKTLKGTLIAVPIVNVFGFIHKSRYLPDRRDLNRCFPGSEKGSLASRMANTFFTQIAKRCDYIVDLHTGAIH RTNLPQIRANLSNPETLRIAKAFATPLIVDSPLRDGSLRSEAERCGIPVLTYEAGEALRFEPIAINAGYVGVQRVMQSIG MLKASRKRLPTAIIAKSTGWLRAESDGILRTIVTLGEQVEKDQVLAYISAPLGHGEIEIIAHKGGIVIGQQTLPLVNEGD AIFNLAYFSEDDEMVGQTVETYIDEMIDADTDQLTNGQITTSTL
Specific function: Unknown
COG id: COG3608
COG function: function code R; Predicted deacylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39917; Mature: 39917
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRQKGLKLVAKARQNKAFDILTYSVAPGERKVIEIEAAKLYTHSPLSIPVEIINGQHAG CCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCC PILMVNAAIHGDELNGVEIVRQLINNIDPKTLKGTLIAVPIVNVFGFIHKSRYLPDRRDL CEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHCCCEEEEHHHHHHHHHHHHHCCCCHHHH NRCFPGSEKGSLASRMANTFFTQIAKRCDYIVDLHTGAIHRTNLPQIRANLSNPETLRIA HHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEECCCCHHHHHCCCCCHHEEHH KAFATPLIVDSPLRDGSLRSEAERCGIPVLTYEAGEALRFEPIAINAGYVGVQRVMQSIG HHHCCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCEEEEEEEEECCHHHHHHHHHHHH MLKASRKRLPTAIIAKSTGWLRAESDGILRTIVTLGEQVEKDQVLAYISAPLGHGEIEII HHHHHHHHCCEEEEECCCCCEEECCCCHHHHHHHHHHHCCHHHEEEEEECCCCCCEEEEE AHKGGIVIGQQTLPLVNEGDAIFNLAYFSEDDEMVGQTVETYIDEMIDADTDQLTNGQIT EECCCEEECCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE TSTL ECCC >Mature Secondary Structure MQRQKGLKLVAKARQNKAFDILTYSVAPGERKVIEIEAAKLYTHSPLSIPVEIINGQHAG CCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCC PILMVNAAIHGDELNGVEIVRQLINNIDPKTLKGTLIAVPIVNVFGFIHKSRYLPDRRDL CEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHCCCEEEEHHHHHHHHHHHHHCCCCHHHH NRCFPGSEKGSLASRMANTFFTQIAKRCDYIVDLHTGAIHRTNLPQIRANLSNPETLRIA HHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCEECCCCHHHHHCCCCCHHEEHH KAFATPLIVDSPLRDGSLRSEAERCGIPVLTYEAGEALRFEPIAINAGYVGVQRVMQSIG HHHCCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCEEEEEEEEECCHHHHHHHHHHHH MLKASRKRLPTAIIAKSTGWLRAESDGILRTIVTLGEQVEKDQVLAYISAPLGHGEIEII HHHHHHHHCCEEEEECCCCCEEECCCCHHHHHHHHHHHCCHHHEEEEEECCCCCCEEEEE AHKGGIVIGQQTLPLVNEGDAIFNLAYFSEDDEMVGQTVETYIDEMIDADTDQLTNGQIT EECCCEEECCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE TSTL ECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA