| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is chiA [H]
Identifier: 209694345
GI number: 209694345
Start: 845055
End: 847595
Strand: Reverse
Name: chiA [H]
Synonym: VSAL_I0757
Alternate gene names: 209694345
Gene position: 847595-845055 (Counterclockwise)
Preceding gene: 209694347
Following gene: 209694341
Centisome position: 25.49
GC content: 42.66
Gene sequence:
>2541_bases ATGAAACGGATTTTCATTAACAGTGCTATTGCCTCTGCCCTTTTTATTTCATACGGAGCCAATGCTTTTGATTGCAGTTC ACTCCCTCTTTGGCAAAATTCAGAACCCTACAGCGGTGGTGCTGAAATACAACAAAATCAGATTGCATACCAAGCACAAT GGTGGTCCCAAGGAAATTCACCAGAAACACATTCAGGTGAATGGCAAAAATGGAAACGTTTAGGTCAATGCGATAATAGT GGCGGGAATACCGCACCAACACTGTCGATCATCTCCCCCTTAAATAATGCTGCGATTGCAGAAGGAAGTGCCATCACATT ACAAGCCAATGCAGTGGATAGTGACGGAGAAATTACTCGTGTTGAATTTTTAGCGGATAGCCAATCCATTACGATAATCA CCGCCCCACCGTATAACACGGATTGGGTAGCACTAAAAAACACGACATCAATTTCAGTGATCGCTACTGATAATGAAGGC AGTTCAACGACTGAATCCGTCTCTATTCGCGTACAATCAACCGGGGATTTAATCCCACCATCAATACAACTTCTCTCACC AACGGGCAATGAAGTTCTCTCTGTCGGCGATGATTTATTAATGTCCGCAGACGCAATAGATAACGATGGTCAAATAGCTT ATGTCGAGTTTTATGTTGATAGCGAACTGGTTTTTACAGACAGTTCAGCGCCTTTTGAACACTTATGGACAGCAACAAAG GGAACGCATCGTTTTAAAGCAAAAGCGATCGATAATGATGAACAGTCAAGCATCAGCCAAGAAAGTATCTTAACCATCAC GGAACCATCTAGCGGTGGTTGTGCAGGCTTACCTCAATACAAATCAGGAACGGCTTACACTCAAGGCGATGAAATACAAA ATATTAATCAAAAATATCGTTGTGATGTCGGTGGCTGGTGTTCTTCTTCATCTGATTGGGCGTATGCTCCAGGCACAGGC TCAAGCTGGCAAGATGCATGGACAGGGCTAGGCGTTTGTAGCACTCCACCAGAGGTCGCCATTACTTCACCAAGTGATAA CAGCGTCATTCTTGCAGGATCGTCCATTATAATAAATGCCACCGCAAGCGACAGTGATGGCAGCATTGTTGGCGTAGAAT TCTTTGCAAATGACATGACACTAGGCGCTGATACTCAAGCCCCTTATTCCATGACTTGGACTGCCGCCTTAATTGGAAAT AACACACTAAAAGCCGTAGCAACCGATAATGAAGGAAATAACAGTGACAATAGTATTCTTGTTACTGTCAGTGATCAAAA CGTAGTGACAAGTCTAACTTCCCCTGCATCTGGATCGAGCCTTGCCTTAGGAAAAGTTACTCAACTAAGTGCAACCGCAA CTTCATTAACCAGCTCGATAACTCAGGTTGATTTCTTAATTAATGGGGCAATCGTTGGGTCAGACACAACAACACCATAC AATACCAATTGGACACCAAGTGCTATTGGTTCTTACTCCATTTCAACAGAGGCCACTGATGCCCAAGGAAATAAAGCACT CTCAATAGCATCAAGTATTGCCGTTCTAGAACAAAGCCAAGCAACGCATAAATTAATTGGTTATTGGCATAATTTCGTTA ACGGTTCTGGTTGCCCTATTCGTTTATCGGAAATGCCTGATGAGTGGGACGTTATCGATATTGCATTTGCTGATAATGAT AGAAACAGCAACGGAACGGTGCATTTCAACCTCTACTCTGGCGATATTCACAGTAGCTGTCTCGCTCTAGATCCTAATCA ATTTAAACAAGACATGGCCGCGTTACAGGCAAAAGGAAAAATATTTGTACTTTCTCTTGGTGGTGCAGAAGGCACAATAA CCTTAAATACAGAACAAGATGAAGCCAATTTTGTCAGTAGTTTAACCGCACTTATTGATGAATGGGGCTTTGATGGGCTA GATATCGATTTAGAAAGCGGATCGAATTTACTTCATGGCACACAAATTCAAGCTCGCTTACCTACGGCACTAAAACAAAT AGAAATGAATATGGGCGGAGACATGTATTTAACCATGGCGCCAGAACATCCTTATGTTCAAGGTGGAATGGTTGCTTACA GCGGTATTTGGGGCGCTTATATTCCAGTAATAGACCAAGTTCGAGATACATTAGATCTTCTTCATGTTCAATTATATAAC AATGGCGGATTAGCAAACCCATACATGCCAGGAGCGGCTCCAGAAGGATCCGTTGATATGATGGTAGCGTCGGTAAAAAT GCTCGTTGAAGGGTTTGAACTCGCTGATGGCTCTTTCTTTGCTCCACTAAGAGATGATCAAGTCGCTATTGGTCTACCTT CAGGGCCAAGTTCAGCAAACTCCGGACAAGCGCCAACACAAAACATTATAGATGCATTAGATTGTGTCACTTATGGCTCA GCATGCAGCACCGTTGTTCCAAATAAATTATACCCGAATTTTGGTGGTGTGATGACATGGTCAATTAACTGGGATAAACA TGATGGGTTTAATTTCTCACAACCGATTGGCGAGAAACTGACATTAATGAACGCTCAATAA
Upstream 100 bases:
>100_bases GATCTCCTGTTAAATAGCAAAACAAAATGAAATATCTTCTTAATTATCGACTAAAACTTAAGAGTCAATCCCCCCGACTT ACTCGATTAAGGATATATCT
Downstream 100 bases:
>100_bases CATAAAACAACAGGCACAAAAAAGGCGCTCAAGTAAGCGCCTTTTTTATTTTAAATAGATAGAGAAGATTACTCTTCGTC GTAATCGTATTCGCTTTCGT
Product: endochitinase ChiA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MKRIFINSAIASALFISYGANAFDCSSLPLWQNSEPYSGGAEIQQNQIAYQAQWWSQGNSPETHSGEWQKWKRLGQCDNS GGNTAPTLSIISPLNNAAIAEGSAITLQANAVDSDGEITRVEFLADSQSITIITAPPYNTDWVALKNTTSISVIATDNEG SSTTESVSIRVQSTGDLIPPSIQLLSPTGNEVLSVGDDLLMSADAIDNDGQIAYVEFYVDSELVFTDSSAPFEHLWTATK GTHRFKAKAIDNDEQSSISQESILTITEPSSGGCAGLPQYKSGTAYTQGDEIQNINQKYRCDVGGWCSSSSDWAYAPGTG SSWQDAWTGLGVCSTPPEVAITSPSDNSVILAGSSIIINATASDSDGSIVGVEFFANDMTLGADTQAPYSMTWTAALIGN NTLKAVATDNEGNNSDNSILVTVSDQNVVTSLTSPASGSSLALGKVTQLSATATSLTSSITQVDFLINGAIVGSDTTTPY NTNWTPSAIGSYSISTEATDAQGNKALSIASSIAVLEQSQATHKLIGYWHNFVNGSGCPIRLSEMPDEWDVIDIAFADND RNSNGTVHFNLYSGDIHSSCLALDPNQFKQDMAALQAKGKIFVLSLGGAEGTITLNTEQDEANFVSSLTALIDEWGFDGL DIDLESGSNLLHGTQIQARLPTALKQIEMNMGGDMYLTMAPEHPYVQGGMVAYSGIWGAYIPVIDQVRDTLDLLHVQLYN NGGLANPYMPGAAPEGSVDMMVASVKMLVEGFELADGSFFAPLRDDQVAIGLPSGPSSANSGQAPTQNIIDALDCVTYGS ACSTVVPNKLYPNFGGVMTWSINWDKHDGFNFSQPIGEKLTLMNAQ
Sequences:
>Translated_846_residues MKRIFINSAIASALFISYGANAFDCSSLPLWQNSEPYSGGAEIQQNQIAYQAQWWSQGNSPETHSGEWQKWKRLGQCDNS GGNTAPTLSIISPLNNAAIAEGSAITLQANAVDSDGEITRVEFLADSQSITIITAPPYNTDWVALKNTTSISVIATDNEG SSTTESVSIRVQSTGDLIPPSIQLLSPTGNEVLSVGDDLLMSADAIDNDGQIAYVEFYVDSELVFTDSSAPFEHLWTATK GTHRFKAKAIDNDEQSSISQESILTITEPSSGGCAGLPQYKSGTAYTQGDEIQNINQKYRCDVGGWCSSSSDWAYAPGTG SSWQDAWTGLGVCSTPPEVAITSPSDNSVILAGSSIIINATASDSDGSIVGVEFFANDMTLGADTQAPYSMTWTAALIGN NTLKAVATDNEGNNSDNSILVTVSDQNVVTSLTSPASGSSLALGKVTQLSATATSLTSSITQVDFLINGAIVGSDTTTPY NTNWTPSAIGSYSISTEATDAQGNKALSIASSIAVLEQSQATHKLIGYWHNFVNGSGCPIRLSEMPDEWDVIDIAFADND RNSNGTVHFNLYSGDIHSSCLALDPNQFKQDMAALQAKGKIFVLSLGGAEGTITLNTEQDEANFVSSLTALIDEWGFDGL DIDLESGSNLLHGTQIQARLPTALKQIEMNMGGDMYLTMAPEHPYVQGGMVAYSGIWGAYIPVIDQVRDTLDLLHVQLYN NGGLANPYMPGAAPEGSVDMMVASVKMLVEGFELADGSFFAPLRDDQVAIGLPSGPSSANSGQAPTQNIIDALDCVTYGS ACSTVVPNKLYPNFGGVMTWSINWDKHDGFNFSQPIGEKLTLMNAQ >Mature_846_residues MKRIFINSAIASALFISYGANAFDCSSLPLWQNSEPYSGGAEIQQNQIAYQAQWWSQGNSPETHSGEWQKWKRLGQCDNS GGNTAPTLSIISPLNNAAIAEGSAITLQANAVDSDGEITRVEFLADSQSITIITAPPYNTDWVALKNTTSISVIATDNEG SSTTESVSIRVQSTGDLIPPSIQLLSPTGNEVLSVGDDLLMSADAIDNDGQIAYVEFYVDSELVFTDSSAPFEHLWTATK GTHRFKAKAIDNDEQSSISQESILTITEPSSGGCAGLPQYKSGTAYTQGDEIQNINQKYRCDVGGWCSSSSDWAYAPGTG SSWQDAWTGLGVCSTPPEVAITSPSDNSVILAGSSIIINATASDSDGSIVGVEFFANDMTLGADTQAPYSMTWTAALIGN NTLKAVATDNEGNNSDNSILVTVSDQNVVTSLTSPASGSSLALGKVTQLSATATSLTSSITQVDFLINGAIVGSDTTTPY NTNWTPSAIGSYSISTEATDAQGNKALSIASSIAVLEQSQATHKLIGYWHNFVNGSGCPIRLSEMPDEWDVIDIAFADND RNSNGTVHFNLYSGDIHSSCLALDPNQFKQDMAALQAKGKIFVLSLGGAEGTITLNTEQDEANFVSSLTALIDEWGFDGL DIDLESGSNLLHGTQIQARLPTALKQIEMNMGGDMYLTMAPEHPYVQGGMVAYSGIWGAYIPVIDQVRDTLDLLHVQLYN NGGLANPYMPGAAPEGSVDMMVASVKMLVEGFELADGSFFAPLRDDQVAIGLPSGPSSANSGQAPTQNIIDALDCVTYGS ACSTVVPNKLYPNFGGVMTWSINWDKHDGFNFSQPIGEKLTLMNAQ
Specific function: Unknown
COG id: COG3979
COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 89753; Mature: 89753
Theoretical pI: Translated: 3.92; Mature: 3.92
Prosite motif: PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIFINSAIASALFISYGANAFDCSSLPLWQNSEPYSGGAEIQQNQIAYQAQWWSQGNS CCEEEEHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCC PETHSGEWQKWKRLGQCDNSGGNTAPTLSIISPLNNAAIAEGSAITLQANAVDSDGEITR CCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEECCCCEEEEEECCCCCCCCEEE VEFLADSQSITIITAPPYNTDWVALKNTTSISVIATDNEGSSTTESVSIRVQSTGDLIPP EEEEECCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCC SIQLLSPTGNEVLSVGDDLLMSADAIDNDGQIAYVEFYVDSELVFTDSSAPFEHLWTATK CEEEECCCCCHHHHCCCHHEEECCCCCCCCCEEEEEEEECCEEEEECCCCCHHHHEECCC GTHRFKAKAIDNDEQSSISQESILTITEPSSGGCAGLPQYKSGTAYTQGDEIQNINQKYR CCCEEEEEECCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEE CDVGGWCSSSSDWAYAPGTGSSWQDAWTGLGVCSTPPEVAITSPSDNSVILAGSSIIINA CCCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCEEEEEE TASDSDGSIVGVEFFANDMTLGADTQAPYSMTWTAALIGNNTLKAVATDNEGNNSDNSIL ECCCCCCCEEEEEEEECCEEECCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCEEE VTVSDQNVVTSLTSPASGSSLALGKVTQLSATATSLTSSITQVDFLINGAIVGSDTTTPY EEECCCCEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHEEEEEEECEEECCCCCCCC NTNWTPSAIGSYSISTEATDAQGNKALSIASSIAVLEQSQATHKLIGYWHNFVNGSGCPI CCCCCHHHCCCEEECCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEE RLSEMPDEWDVIDIAFADNDRNSNGTVHFNLYSGDIHSSCLALDPNQFKQDMAALQAKGK EECCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCC IFVLSLGGAEGTITLNTEQDEANFVSSLTALIDEWGFDGLDIDLESGSNLLHGTQIQARL EEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCEEEHHH PTALKQIEMNMGGDMYLTMAPEHPYVQGGMVAYSGIWGAYIPVIDQVRDTLDLLHVQLYN HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEEEEC NGGLANPYMPGAAPEGSVDMMVASVKMLVEGFELADGSFFAPLRDDQVAIGLPSGPSSAN CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCEECCCCCCEEEEECCCCCCCCC SGQAPTQNIIDALDCVTYGSACSTVVPNKLYPNFGGVMTWSINWDKHDGFNFSQPIGEKL CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEE TLMNAQ EEEECC >Mature Secondary Structure MKRIFINSAIASALFISYGANAFDCSSLPLWQNSEPYSGGAEIQQNQIAYQAQWWSQGNS CCEEEEHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCEECCEEEEEEEECCCCCC PETHSGEWQKWKRLGQCDNSGGNTAPTLSIISPLNNAAIAEGSAITLQANAVDSDGEITR CCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEECCCCEEEEEECCCCCCCCEEE VEFLADSQSITIITAPPYNTDWVALKNTTSISVIATDNEGSSTTESVSIRVQSTGDLIPP EEEEECCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCC SIQLLSPTGNEVLSVGDDLLMSADAIDNDGQIAYVEFYVDSELVFTDSSAPFEHLWTATK CEEEECCCCCHHHHCCCHHEEECCCCCCCCCEEEEEEEECCEEEEECCCCCHHHHEECCC GTHRFKAKAIDNDEQSSISQESILTITEPSSGGCAGLPQYKSGTAYTQGDEIQNINQKYR CCCEEEEEECCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEE CDVGGWCSSSSDWAYAPGTGSSWQDAWTGLGVCSTPPEVAITSPSDNSVILAGSSIIINA CCCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCEEEEEE TASDSDGSIVGVEFFANDMTLGADTQAPYSMTWTAALIGNNTLKAVATDNEGNNSDNSIL ECCCCCCCEEEEEEEECCEEECCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCEEE VTVSDQNVVTSLTSPASGSSLALGKVTQLSATATSLTSSITQVDFLINGAIVGSDTTTPY EEECCCCEEEEECCCCCCCEEEECCEEEHHHHHHHHHHHHHEEEEEEECEEECCCCCCCC NTNWTPSAIGSYSISTEATDAQGNKALSIASSIAVLEQSQATHKLIGYWHNFVNGSGCPI CCCCCHHHCCCEEECCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEE RLSEMPDEWDVIDIAFADNDRNSNGTVHFNLYSGDIHSSCLALDPNQFKQDMAALQAKGK EECCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCC IFVLSLGGAEGTITLNTEQDEANFVSSLTALIDEWGFDGLDIDLESGSNLLHGTQIQARL EEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCEEEHHH PTALKQIEMNMGGDMYLTMAPEHPYVQGGMVAYSGIWGAYIPVIDQVRDTLDLLHVQLYN HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEEEEC NGGLANPYMPGAAPEGSVDMMVASVKMLVEGFELADGSFFAPLRDDQVAIGLPSGPSSAN CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCEECCCCCCEEEEECCCCCCCCC SGQAPTQNIIDALDCVTYGSACSTVVPNKLYPNFGGVMTWSINWDKHDGFNFSQPIGEKL CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEE TLMNAQ EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]