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The map label for this gene is aldR [H]

Identifier: 209694331

GI number: 209694331

Start: 828610

End: 828999

Strand: Reverse

Name: aldR [H]

Synonym: VSAL_I0742

Alternate gene names: 209694331

Gene position: 828999-828610 (Counterclockwise)

Preceding gene: 209694332

Following gene: 209694330

Centisome position: 24.93

GC content: 39.74

Gene sequence:

>390_bases
ATGAAACAAATTATCGTGGCAAAATCAGCTCCAGAAGCAATCGGTCCTTACTCTCACGGTACTGCATTTAATGGTCTTAT
TTTCACATCAGGTCAATTACCTGTTGATAGCTCAACAGGCTCTGTTGTAGAAGGGGGCATTACCGCTCAATCAGAAATGT
CTCTTAAAAACTTAATTTCAGTAATTGAAGCCGCTGATGGTGATGTGAATACGGTTTTAAAAACAACCTGCTACCTTGCT
AATATCACTGATTTTTCTGCATTTAACGAAGTATATAAAACCGTTTTTCATACCGACTGCCCTGCTCGTTCTTGCTTTGC
GGTAAAAGATCTTCCGCTTGGCGTATTAGTTGAAGTCGAAGCGATTGCTCACAAGAAAACAACGGTATAA

Upstream 100 bases:

>100_bases
AAGCATAAATTCAACTCACACAAAATAAATGCAATTATTTTTGCATAATCCAATAACACACCACCAAGTCAACAATAGTT
GCAAAAAAAGAATGGGAAAT

Downstream 100 bases:

>100_bases
CTAAAAAGGTGAACAAAATGAACTCTACCTGGAAGCAATACATTACTATTTTAAAAAATGTCGTGAAGCCTGCTCTTGGC
TGTACTGAACCTATTTGTGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKQIIVAKSAPEAIGPYSHGTAFNGLIFTSGQLPVDSSTGSVVEGGITAQSEMSLKNLISVIEAADGDVNTVLKTTCYLA
NITDFSAFNEVYKTVFHTDCPARSCFAVKDLPLGVLVEVEAIAHKKTTV

Sequences:

>Translated_129_residues
MKQIIVAKSAPEAIGPYSHGTAFNGLIFTSGQLPVDSSTGSVVEGGITAQSEMSLKNLISVIEAADGDVNTVLKTTCYLA
NITDFSAFNEVYKTVFHTDCPARSCFAVKDLPLGVLVEVEAIAHKKTTV
>Mature_129_residues
MKQIIVAKSAPEAIGPYSHGTAFNGLIFTSGQLPVDSSTGSVVEGGITAQSEMSLKNLISVIEAADGDVNTVLKTTCYLA
NITDFSAFNEVYKTVFHTDCPARSCFAVKDLPLGVLVEVEAIAHKKTTV

Specific function: Implicated in the regulation of isoleucine biosynthesis [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=40.650406504065, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=39.5348837209302, Blast_Score=99, Evalue=8e-23,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=39.84375, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1787245, Length=123, Percent_Identity=28.4552845528455, Blast_Score=64, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=47.5409836065574, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=47.5409836065574, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=47.5409836065574, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=45.6310679611651, Blast_Score=94, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=35, Blast_Score=88, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=42.2764227642276, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13624; Mature: 13624

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQIIVAKSAPEAIGPYSHGTAFNGLIFTSGQLPVDSSTGSVVEGGITAQSEMSLKNLIS
CCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
VIEAADGDVNTVLKTTCYLANITDFSAFNEVYKTVFHTDCPARSCFAVKDLPLGVLVEVE
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEHH
AIAHKKTTV
HHHHCCCCC
>Mature Secondary Structure
MKQIIVAKSAPEAIGPYSHGTAFNGLIFTSGQLPVDSSTGSVVEGGITAQSEMSLKNLIS
CCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
VIEAADGDVNTVLKTTCYLANITDFSAFNEVYKTVFHTDCPARSCFAVKDLPLGVLVEVE
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEHH
AIAHKKTTV
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9335274; 11337471 [H]