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The map label for this gene is yhaM [C]

Identifier: 209694330

GI number: 209694330

Start: 827315

End: 828592

Strand: Reverse

Name: yhaM [C]

Synonym: VSAL_I0741

Alternate gene names: 209694330

Gene position: 828592-827315 (Counterclockwise)

Preceding gene: 209694331

Following gene: 209694329

Centisome position: 24.92

GC content: 40.06

Gene sequence:

>1278_bases
ATGAACTCTACCTGGAAGCAATACATTACTATTTTAAAAAATGTCGTGAAGCCTGCTCTTGGCTGTACTGAACCTATTTG
TGCGGCCTATGCAACAAGCGTAGCAACGCAAATGCTAGGAGAAAAAGCAGAAACGATTGATGTTTTTGTCTCTGATAATT
TGTATAAAAATAGTATGGGTGTTTTTGTTCCAAGAACAGGTAGAGTTGGTCTTGCCATTGCTGCTGCTGCTGGGGCTACA
GGTGGAAACCCTGAAGCAGGTTTAGAAGTTCTTGCTAAACTGACGCAATCCCAAGTAAATGAAGCGCAACAACTTATTGA
TGCTGGCCGAGTTCAAGTAAAACGAGAAACTACAGATGAGTTCATTTATTGTCGTGTTGTAGTTAAAGGCTCACAACATC
ACGCAGAAGTCACCATCAGTGGGGGTCACACTCTCATTGTAGAAAAACGACTTGATGATAATGTTATTTTTTCCCTTGAT
TCTTCATTACCAAAAGCCTCTACCGCTTCTATTTGTGATGGTGTAGATATCACTATTTCATCCATTTATGACTTTGCAAC
TCACGCTGAATTCGATGACATTAAATTTATTCTTAAAGCTAAAGATCTCAATATTGCACTAGCTCAAGAAGGACTAAAGA
ACCCATACGGCTTAGAAGTGGGTCGAACTTATCAAAAGAACATAGATACTGGTTTACTTTCAAAAAGCTTAGACAGTGAT
ATTTTAATTTATACCTCTGCCGCGTCCGATGCTCGAATGGGTGGTGCAAATTTACCAGCCATGTCTAATTATGGCAGCGG
AAACCAGGGTATAGCAGCTACGATTCCTGTAGTAAAAATGGCTGACTTTTATAATGCCGACGAAGAAACATTGGCAAGAG
CATTCATAATGAGTCATCTCGGTGCTATTTATATTAAATCTCATTATCCTCCACTATCCGCTTTTTGTGGCAACGCAGTA
ACCTCTGCGGCTGCAGCAATGGCAATGGTCTATTTAGCGGGGGGGTCATTCGAACAATCTTGTTCAGCAATACAAAATAC
CATCAGTGACACCAGCGGTATGATCTGCGATGGTGCAAAATCGACTTGTGCGATGAAAGTAGGCAGTAGTGCCCAATCAG
CAATGAAATCATCCCTACTTGCCTTAAATAATCATTGTGTAACGAAACAGGGTGTTATTGCTGAAGATGTAGAAAAGACC
ATTAAAAACATAGGCAGAATGATAACAACCGGAATGCCAAATATTGATCATGAAATCATTGAAATAATGGCGTCATAA

Upstream 100 bases:

>100_bases
GTTCTTGCTTTGCGGTAAAAGATCTTCCGCTTGGCGTATTAGTTGAAGTCGAAGCGATTGCTCACAAGAAAACAACGGTA
TAACTAAAAAGGTGAACAAA

Downstream 100 bases:

>100_bases
TGAAAAGATGTCACTTACATTCTAAGTGACATCATCTTTTTACCAACATGAAGAAAACATATGCTACATAAACTTTCTAC
TGCCGATAAACTCATACTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MNSTWKQYITILKNVVKPALGCTEPICAAYATSVATQMLGEKAETIDVFVSDNLYKNSMGVFVPRTGRVGLAIAAAAGAT
GGNPEAGLEVLAKLTQSQVNEAQQLIDAGRVQVKRETTDEFIYCRVVVKGSQHHAEVTISGGHTLIVEKRLDDNVIFSLD
SSLPKASTASICDGVDITISSIYDFATHAEFDDIKFILKAKDLNIALAQEGLKNPYGLEVGRTYQKNIDTGLLSKSLDSD
ILIYTSAASDARMGGANLPAMSNYGSGNQGIAATIPVVKMADFYNADEETLARAFIMSHLGAIYIKSHYPPLSAFCGNAV
TSAAAAMAMVYLAGGSFEQSCSAIQNTISDTSGMICDGAKSTCAMKVGSSAQSAMKSSLLALNNHCVTKQGVIAEDVEKT
IKNIGRMITTGMPNIDHEIIEIMAS

Sequences:

>Translated_425_residues
MNSTWKQYITILKNVVKPALGCTEPICAAYATSVATQMLGEKAETIDVFVSDNLYKNSMGVFVPRTGRVGLAIAAAAGAT
GGNPEAGLEVLAKLTQSQVNEAQQLIDAGRVQVKRETTDEFIYCRVVVKGSQHHAEVTISGGHTLIVEKRLDDNVIFSLD
SSLPKASTASICDGVDITISSIYDFATHAEFDDIKFILKAKDLNIALAQEGLKNPYGLEVGRTYQKNIDTGLLSKSLDSD
ILIYTSAASDARMGGANLPAMSNYGSGNQGIAATIPVVKMADFYNADEETLARAFIMSHLGAIYIKSHYPPLSAFCGNAV
TSAAAAMAMVYLAGGSFEQSCSAIQNTISDTSGMICDGAKSTCAMKVGSSAQSAMKSSLLALNNHCVTKQGVIAEDVEKT
IKNIGRMITTGMPNIDHEIIEIMAS
>Mature_425_residues
MNSTWKQYITILKNVVKPALGCTEPICAAYATSVATQMLGEKAETIDVFVSDNLYKNSMGVFVPRTGRVGLAIAAAAGAT
GGNPEAGLEVLAKLTQSQVNEAQQLIDAGRVQVKRETTDEFIYCRVVVKGSQHHAEVTISGGHTLIVEKRLDDNVIFSLD
SSLPKASTASICDGVDITISSIYDFATHAEFDDIKFILKAKDLNIALAQEGLKNPYGLEVGRTYQKNIDTGLLSKSLDSD
ILIYTSAASDARMGGANLPAMSNYGSGNQGIAATIPVVKMADFYNADEETLARAFIMSHLGAIYIKSHYPPLSAFCGNAV
TSAAAAMAMVYLAGGSFEQSCSAIQNTISDTSGMICDGAKSTCAMKVGSSAQSAMKSSLLALNNHCVTKQGVIAEDVEKT
IKNIGRMITTGMPNIDHEIIEIMAS

Specific function: Unknown

COG id: COG3681

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0597 family

Homologues:

Organism=Escherichia coli, GI48994923, Length=428, Percent_Identity=47.8971962616822, Blast_Score=363, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y741_ALISL (B6EGZ9)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262258.1
- GeneID:   6986630
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0741
- HOGENOM:   HBG296671
- OMA:   LSGMICD
- ProtClustDB:   CLSK906244
- HAMAP:   MF_01845
- InterPro:   IPR005130
- InterPro:   IPR021144
- PIRSF:   PIRSF006054

Pfam domain/function: PF03313 SDH_alpha

EC number: NA

Molecular weight: Translated: 45055; Mature: 45055

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSTWKQYITILKNVVKPALGCTEPICAAYATSVATQMLGEKAETIDVFVSDNLYKNSMG
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCC
VFVPRTGRVGLAIAAAAGATGGNPEAGLEVLAKLTQSQVNEAQQLIDAGRVQVKRETTDE
EEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
FIYCRVVVKGSQHHAEVTISGGHTLIVEKRLDDNVIFSLDSSLPKASTASICDGVDITIS
EEEEEEEEECCCCCEEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCHHHCCCCCEEHH
SIYDFATHAEFDDIKFILKAKDLNIALAQEGLKNPYGLEVGRTYQKNIDTGLLSKSLDSD
HHHHHHHCCCCCCEEEEEEECCCEEEEHHHHCCCCCCCCCCCHHHHCCCHHHHHHCCCCC
ILIYTSAASDARMGGANLPAMSNYGSGNQGIAATIPVVKMADFYNADEETLARAFIMSHL
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
GAIYIKSHYPPLSAFCGNAVTSAAAAMAMVYLAGGSFEQSCSAIQNTISDTSGMICDGAK
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCC
STCAMKVGSSAQSAMKSSLLALNNHCVTKQGVIAEDVEKTIKNIGRMITTGMPNIDHEII
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EIMAS
HHHCC
>Mature Secondary Structure
MNSTWKQYITILKNVVKPALGCTEPICAAYATSVATQMLGEKAETIDVFVSDNLYKNSMG
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCC
VFVPRTGRVGLAIAAAAGATGGNPEAGLEVLAKLTQSQVNEAQQLIDAGRVQVKRETTDE
EEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
FIYCRVVVKGSQHHAEVTISGGHTLIVEKRLDDNVIFSLDSSLPKASTASICDGVDITIS
EEEEEEEEECCCCCEEEEEECCEEEEEEECCCCCEEEEECCCCCCCCCHHHCCCCCEEHH
SIYDFATHAEFDDIKFILKAKDLNIALAQEGLKNPYGLEVGRTYQKNIDTGLLSKSLDSD
HHHHHHHCCCCCCEEEEEEECCCEEEEHHHHCCCCCCCCCCCHHHHCCCHHHHHHCCCCC
ILIYTSAASDARMGGANLPAMSNYGSGNQGIAATIPVVKMADFYNADEETLARAFIMSHL
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHH
GAIYIKSHYPPLSAFCGNAVTSAAAAMAMVYLAGGSFEQSCSAIQNTISDTSGMICDGAK
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEECCCC
STCAMKVGSSAQSAMKSSLLALNNHCVTKQGVIAEDVEKTIKNIGRMITTGMPNIDHEII
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EIMAS
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA