| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is engA
Identifier: 209694322
GI number: 209694322
Start: 816940
End: 818442
Strand: Direct
Name: engA
Synonym: VSAL_I0733
Alternate gene names: 209694322
Gene position: 816940-818442 (Clockwise)
Preceding gene: 209694321
Following gene: 209694323
Centisome position: 24.57
GC content: 40.39
Gene sequence:
>1503_bases ATGATTCCTGTTGTTGCTCTGGTAGGGCGTCCAAATGTTGGTAAGTCGACGCTGTTTAACCGTGTTACACGCACAAGGGA TGCATTAGTTGCTGACTTTCCAGGCTTAACGCGTGACCGTAAATATGGTCGAGCTAAGTTAGAAGAGCAAGAATTCATTC TAATCGATACCGGCGGTATTGATGGAACAGAAGAAGGTGTTGAAACTAAAATGGCTGAACAGTCATTAGCTGCGATTGAA GAAGCTGATGTTGTGCTATTTATGGTTGATGGCCGTGCTGGTTTGACATCATCTGATGAAGCGATAGCAAAACACTTACG TTCTCGTGAAAAACCAACATTCTTAGTCGTAAACAAGATTGATGGTATTGATGCAGATGCGGCAAGTGCTGAGTTCTGGC AATTAGGTATGAGTAAAGTATACCAAATCGCCGCTTCACACGGTCGTGGTGTCACTTCTCTGCTTGAGCTTGCTCTTGCA CCTTTTATGGAAGAGCTTGTTGAAGAATCTTTAAGAGATGAAAACGGTGAGATTACTGATCTGACTGAATTTGAAGATTT TGAAGACGAAGAAAAAGATCTTACAGAAGAAGATGCAGAGAAAGATTTTGCTCGTCTTCAAGATCAACCAATCAAACTTG CTATTATCGGTCGTCCTAACGTAGGTAAATCAACGCTAATTAACCGTATTTTAGGTGAAGAGCGTGTGGTTGTTTACGAT ATGCCAGGTACAACTCGTGACTCTATTTACATTCCAATGGAACGTGAAGGTCAAGAATATGTACTGATCGATACTGCGGG TGTTCGTCGTCGCGGTCGTATCAATGAAACCGTTGAAAAATTCTCAGTAATCAAAACATTGAAAGCAATCGAAGATGCTA ACGTTGTTTTATTGGTTATTGATGCGCGTGAAAATATTTCAGATCAAGATCTAAGCTTGTTAGGCTTTGCATTGAACGCG GGTCGTTCTTTAGTTATTGCTGTTAATAAGTGGGATGGATTGAATAATGAAGTTAAAGAGAAAGTAAAATCAGAACTAGA CCGTCGTTTAGGTTTTGTTGACTTTGCTCGTCTTCACTTTATTTCAGCATTGCATGGTACGGGTGTTGGTCATTTATATG AATCAGTACAAGAAGCCTATGTTTCTGCAACTAAGCGTGTAGGTACATCTGTTCTTACTCGTGTTATGAAGATGGCTCAA GATGATCACCAACCGCCAATGGTTCGTGGCCGTCGTGTGAAATTGAAATACGCGCACGCTGGTGGTTATAACCCACCACT TATCGTTATTCACGGTAACCAAGTAAAAGAATTACCTTCTTCTTACAAACGTTTCTTAATGAACTACTTCCGTAAATCAT TAGAAATCATGGGAACACCAATTCGTATTCAATTCCAGAACAGCGAAAACCCATTTGAAGATCGCGGTGGTAAATTAACA TTGTCTCAAGAGCGTCAACGTAAACGTCTTGTTGGTGCTGTTAAAAACCGCAATAAAAAATAA
Upstream 100 bases:
>100_bases AATCCAATTTGGTGATGGTTTTTATCCGTTCATATTAAAAAAACTATCATCAAATTGGTATTAGCTCGCGCTATGCCTAT GATTAAATTAAGAGGTATAT
Downstream 100 bases:
>100_bases ATTCAACTAAACGATAAACGCCCAATTAATTGGGCGTTTTTTTAGGTAAAAATCATGACTCAATTCTTTTCAACGGATGT TTTATTCTGTCATCAAACGT
Product: GTP-binding protein EngA
Products: NA
Alternate protein names: GTP-binding protein EngA
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MIPVVALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTEEGVETKMAEQSLAAIE EADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNKIDGIDADAASAEFWQLGMSKVYQIAASHGRGVTSLLELALA PFMEELVEESLRDENGEITDLTEFEDFEDEEKDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILGEERVVVYD MPGTTRDSIYIPMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIEDANVVLLVIDARENISDQDLSLLGFALNA GRSLVIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHFISALHGTGVGHLYESVQEAYVSATKRVGTSVLTRVMKMAQ DDHQPPMVRGRRVKLKYAHAGGYNPPLIVIHGNQVKELPSSYKRFLMNYFRKSLEIMGTPIRIQFQNSENPFEDRGGKLT LSQERQRKRLVGAVKNRNKK
Sequences:
>Translated_500_residues MIPVVALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTEEGVETKMAEQSLAAIE EADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNKIDGIDADAASAEFWQLGMSKVYQIAASHGRGVTSLLELALA PFMEELVEESLRDENGEITDLTEFEDFEDEEKDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILGEERVVVYD MPGTTRDSIYIPMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIEDANVVLLVIDARENISDQDLSLLGFALNA GRSLVIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHFISALHGTGVGHLYESVQEAYVSATKRVGTSVLTRVMKMAQ DDHQPPMVRGRRVKLKYAHAGGYNPPLIVIHGNQVKELPSSYKRFLMNYFRKSLEIMGTPIRIQFQNSENPFEDRGGKLT LSQERQRKRLVGAVKNRNKK >Mature_500_residues MIPVVALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGIDGTEEGVETKMAEQSLAAIE EADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNKIDGIDADAASAEFWQLGMSKVYQIAASHGRGVTSLLELALA PFMEELVEESLRDENGEITDLTEFEDFEDEEKDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILGEERVVVYD MPGTTRDSIYIPMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIEDANVVLLVIDARENISDQDLSLLGFALNA GRSLVIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHFISALHGTGVGHLYESVQEAYVSATKRVGTSVLTRVMKMAQ DDHQPPMVRGRRVKLKYAHAGGYNPPLIVIHGNQVKELPSSYKRFLMNYFRKSLEIMGTPIRIQFQNSENPFEDRGGKLT LSQERQRKRLVGAVKNRNKK
Specific function: GTPase that plays an essential role in the late steps of ribosome biogenesis
COG id: COG1160
COG function: function code R; Predicted GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 KH-like domain
Homologues:
Organism=Escherichia coli, GI87082120, Length=499, Percent_Identity=73.74749498998, Blast_Score=738, Evalue=0.0, Organism=Escherichia coli, GI2367268, Length=133, Percent_Identity=34.5864661654135, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1788919, Length=124, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17507259, Length=125, Percent_Identity=32, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323665, Length=205, Percent_Identity=27.8048780487805, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DER_ALISL (B6EGZ1)
Other databases:
- EMBL: FM178379 - RefSeq: YP_002262250.1 - GeneID: 6989432 - GenomeReviews: FM178379_GR - KEGG: vsa:VSAL_I0733 - HOGENOM: HBG592135 - OMA: KCEKAFD - ProtClustDB: PRK00093 - GO: GO:0005622 - HAMAP: MF_00195 - InterPro: IPR016484 - InterPro: IPR006073 - InterPro: IPR015946 - InterPro: IPR002917 - InterPro: IPR005225 - Gene3D: G3DSA:3.30.300.20 - PIRSF: PIRSF006485 - PRINTS: PR00326 - TIGRFAMs: TIGR03594 - TIGRFAMs: TIGR00231
Pfam domain/function: PF01926 MMR_HSR1
EC number: NA
Molecular weight: Translated: 56062; Mature: 56062
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPVVALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGI CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEEECCCC DGTEEGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNKI CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECC DGIDADAASAEFWQLGMSKVYQIAASHGRGVTSLLELALAPFMEELVEESLRDENGEITD CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE LTEFEDFEDEEKDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILGEERVVVYD CCCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEE MPGTTRDSIYIPMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIEDANVVLLVI CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE DARENISDQDLSLLGFALNAGRSLVIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHF ECCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH ISALHGTGVGHLYESVQEAYVSATKRVGTSVLTRVMKMAQDDHQPPMVRGRRVKLKYAHA HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC GGYNPPLIVIHGNQVKELPSSYKRFLMNYFRKSLEIMGTPIRIQFQNSENPFEDRGGKLT CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCEEE LSQERQRKRLVGAVKNRNKK EHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIPVVALVGRPNVGKSTLFNRVTRTRDALVADFPGLTRDRKYGRAKLEEQEFILIDTGGI CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEEECCCC DGTEEGVETKMAEQSLAAIEEADVVLFMVDGRAGLTSSDEAIAKHLRSREKPTFLVVNKI CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECC DGIDADAASAEFWQLGMSKVYQIAASHGRGVTSLLELALAPFMEELVEESLRDENGEITD CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE LTEFEDFEDEEKDLTEEDAEKDFARLQDQPIKLAIIGRPNVGKSTLINRILGEERVVVYD CCCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEE MPGTTRDSIYIPMEREGQEYVLIDTAGVRRRGRINETVEKFSVIKTLKAIEDANVVLLVI CCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE DARENISDQDLSLLGFALNAGRSLVIAVNKWDGLNNEVKEKVKSELDRRLGFVDFARLHF ECCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH ISALHGTGVGHLYESVQEAYVSATKRVGTSVLTRVMKMAQDDHQPPMVRGRRVKLKYAHA HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC GGYNPPLIVIHGNQVKELPSSYKRFLMNYFRKSLEIMGTPIRIQFQNSENPFEDRGGKLT CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCEEE LSQERQRKRLVGAVKNRNKK EHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA