Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694300
Identifier: 209694300
GI number: 209694300
Start: 797562
End: 798602
Strand: Reverse
Name: 209694300
Synonym: VSAL_I0711
Alternate gene names: NA
Gene position: 798602-797562 (Counterclockwise)
Preceding gene: 209694303
Following gene: 209694299
Centisome position: 24.02
GC content: 39.58
Gene sequence:
>1041_bases ATGGAACAGATTTATACGCTTAGCCAACTAATCCAACAGTCCAATTGTGAGTATGCTATTTATGATTTAGGTCGTCGTGT CCAACGCATTGACAGTAAACAATTTGAGTCAATTGAAGCGGCACAACAACCTTATCTTTTTCCTTTGCAACGTCATGCTC ACTTAGCTATCGCTTATTGGAATGAAACAAAACAACCTTGGATTTGGTTTTTAAAACTACCTCTAGATGAACGCAGTCTG TTGCAACAAGCTGATGTAGGTAATTTTATTAAGTATGTAATTGAAGCGATTGGAGTCTCACTAAGCAGTGAGTTAAATGA AGATCAACAACAAAATCTGTCCAACAATCCATACACGTTTAAGCCTAAAGATAACAAGATGGCGATGTTTCATAGCCTCT TACGTGCTGACTTAAAACAGCCAATGAGTCAATATTACGAACAGGCGAAAACCTATCTTTCTGGCAATAATGGTTGGACT AATTGGCAATCGGTTGGCGTTCAAGGGTTAGCTGATGTATGTGCAAATCTAAATAAAGACAATAACTCAGTCGCACTGCG TAACGCATTAACCCACCTACCAAATACAGTTTTATACGCAACGCTAGGGTGCTTAGAGCACATTAAATTGCCAGAAAAAC TAGCTCAAAGACAACTTGAAATCATTAATGATCTTTGCGACTCAGATGCTGCTGATTTATTTTTATTATCAGCCCACATT CGCGCCCTTTCTGGCGCACCTAAAAAGGTCCTTTCTGAAGCATTAGCTCAAATTCTACGTAGTGAACGATTAAGCCACCC TGAAGTATTAGTCGCAATTGCAGGGCGTTGCTGGGGAGGATTAGAAGACATTGCTATTGCGAATCAATTTTTACTTCGTT TGGCCCAAACCGGTGATCAGCAACTCTTTAATCAACTGTTTGCCGATCTCGTAATGCAACCAACATTACGTATGTGTATG TTACAAATTCTACACAGTGATGCCGACTCTCAACTGGCTCAAGCATTAGTCAAACTACAGCAAAATACGAAGAGTGAATA A
Upstream 100 bases:
>100_bases CCGATTGTTCTCGCACTCTCTAATACTTTTAATGACAAAGGATACCATCTTATCAACGGTTGGGTATAATCGAAGCATTA ACCATTGAATAAGATATATC
Downstream 100 bases:
>100_bases AAATGGAGAATCTCTTTGCGATACTCGGCTTAACGTTTTTTTGCTTTCTATTTTGGCAGCAACGAAGACAATCAGAATTT GCTAACCAAGCAATTCAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MEQIYTLSQLIQQSNCEYAIYDLGRRVQRIDSKQFESIEAAQQPYLFPLQRHAHLAIAYWNETKQPWIWFLKLPLDERSL LQQADVGNFIKYVIEAIGVSLSSELNEDQQQNLSNNPYTFKPKDNKMAMFHSLLRADLKQPMSQYYEQAKTYLSGNNGWT NWQSVGVQGLADVCANLNKDNNSVALRNALTHLPNTVLYATLGCLEHIKLPEKLAQRQLEIINDLCDSDAADLFLLSAHI RALSGAPKKVLSEALAQILRSERLSHPEVLVAIAGRCWGGLEDIAIANQFLLRLAQTGDQQLFNQLFADLVMQPTLRMCM LQILHSDADSQLAQALVKLQQNTKSE
Sequences:
>Translated_346_residues MEQIYTLSQLIQQSNCEYAIYDLGRRVQRIDSKQFESIEAAQQPYLFPLQRHAHLAIAYWNETKQPWIWFLKLPLDERSL LQQADVGNFIKYVIEAIGVSLSSELNEDQQQNLSNNPYTFKPKDNKMAMFHSLLRADLKQPMSQYYEQAKTYLSGNNGWT NWQSVGVQGLADVCANLNKDNNSVALRNALTHLPNTVLYATLGCLEHIKLPEKLAQRQLEIINDLCDSDAADLFLLSAHI RALSGAPKKVLSEALAQILRSERLSHPEVLVAIAGRCWGGLEDIAIANQFLLRLAQTGDQQLFNQLFADLVMQPTLRMCM LQILHSDADSQLAQALVKLQQNTKSE >Mature_346_residues MEQIYTLSQLIQQSNCEYAIYDLGRRVQRIDSKQFESIEAAQQPYLFPLQRHAHLAIAYWNETKQPWIWFLKLPLDERSL LQQADVGNFIKYVIEAIGVSLSSELNEDQQQNLSNNPYTFKPKDNKMAMFHSLLRADLKQPMSQYYEQAKTYLSGNNGWT NWQSVGVQGLADVCANLNKDNNSVALRNALTHLPNTVLYATLGCLEHIKLPEKLAQRQLEIINDLCDSDAADLFLLSAHI RALSGAPKKVLSEALAQILRSERLSHPEVLVAIAGRCWGGLEDIAIANQFLLRLAQTGDQQLFNQLFADLVMQPTLRMCM LQILHSDADSQLAQALVKLQQNTKSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39212; Mature: 39212
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQIYTLSQLIQQSNCEYAIYDLGRRVQRIDSKQFESIEAAQQPYLFPLQRHAHLAIAYW CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEEE NETKQPWIWFLKLPLDERSLLQQADVGNFIKYVIEAIGVSLSSELNEDQQQNLSNNPYTF CCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCEE KPKDNKMAMFHSLLRADLKQPMSQYYEQAKTYLSGNNGWTNWQSVGVQGLADVCANLNKD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC NNSVALRNALTHLPNTVLYATLGCLEHIKLPEKLAQRQLEIINDLCDSDAADLFLLSAHI CCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH RALSGAPKKVLSEALAQILRSERLSHPEVLVAIAGRCWGGLEDIAIANQFLLRLAQTGDQ HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH QLFNQLFADLVMQPTLRMCMLQILHSDADSQLAQALVKLQQNTKSE HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEQIYTLSQLIQQSNCEYAIYDLGRRVQRIDSKQFESIEAAQQPYLFPLQRHAHLAIAYW CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEEE NETKQPWIWFLKLPLDERSLLQQADVGNFIKYVIEAIGVSLSSELNEDQQQNLSNNPYTF CCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCEE KPKDNKMAMFHSLLRADLKQPMSQYYEQAKTYLSGNNGWTNWQSVGVQGLADVCANLNKD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC NNSVALRNALTHLPNTVLYATLGCLEHIKLPEKLAQRQLEIINDLCDSDAADLFLLSAHI CCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH RALSGAPKKVLSEALAQILRSERLSHPEVLVAIAGRCWGGLEDIAIANQFLLRLAQTGDQ HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH QLFNQLFADLVMQPTLRMCMLQILHSDADSQLAQALVKLQQNTKSE HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA