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The map label for this gene is syd

Identifier: 209694288

GI number: 209694288

Start: 786899

End: 787447

Strand: Direct

Name: syd

Synonym: VSAL_I0699

Alternate gene names: 209694288

Gene position: 786899-787447 (Clockwise)

Preceding gene: 209694282

Following gene: 209694289

Centisome position: 23.66

GC content: 39.34

Gene sequence:

>549_bases
ATGCCACTTTCGGTAGAGCAAGCGCTTGCTAACTTTAGTCAACGTTATGTCGAAGCATGGAAAGAAAAACATGATAGCCT
TCCGATAAATGAAGAATTAGTGGGATTAGCTTCTCCTTGTATTGATGAAACGCGCAATTTAGAGGTTTTATGGCAACCCG
TCGCTCGCGATGAAAGTATTCGATTAGTTAATATCGAGAATGGCATTGAACTCGATCTGCATGATGACTTTCATGCGTTT
TATGGTGCTCAATTTAGTGCTGATATGACGGCTAAATTTGAAGGTATGAATGTTGAATTACTTCAAATTTGGAGTGATGA
AGATCTTGAAAATTTACAAGGGAACATGCTAGGGCACCTTGTTATGCAGCGTCGATTAAAATTAGTCCCTACGTTGTTTA
TTGCGGTGACGGATGATGAGATGGAAGTGATTTCTATTTGTAATCAATCAGGGGAAGTGATTCTAGATACCGTAGGAACG
AAAAAGCGAAAAGTATTAGCAGAAAGTATGGCTGAGTTTTTAGAAAAGCTTGAACCCGTTGTCGCGTAA

Upstream 100 bases:

>100_bases
TGCCAAAAGTAGATTAGAATAAAGGTCGCTTAGTAAATTAGCGTTATTTGATGCAATTGACGCTAGTTTACTTGAATTTT
TGTCTTATTAGGAGAATCGA

Downstream 100 bases:

>100_bases
ATAAAAATTATTGTGTTAGGTAACGAGCAGAGTTAAATGGATTCCGATAAGGTGTATGTATCGGAATTTTTATTTTTAAA
GTTGTAGTAGGAAAGACACG

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MPLSVEQALANFSQRYVEAWKEKHDSLPINEELVGLASPCIDETRNLEVLWQPVARDESIRLVNIENGIELDLHDDFHAF
YGAQFSADMTAKFEGMNVELLQIWSDEDLENLQGNMLGHLVMQRRLKLVPTLFIAVTDDEMEVISICNQSGEVILDTVGT
KKRKVLAESMAEFLEKLEPVVA

Sequences:

>Translated_182_residues
MPLSVEQALANFSQRYVEAWKEKHDSLPINEELVGLASPCIDETRNLEVLWQPVARDESIRLVNIENGIELDLHDDFHAF
YGAQFSADMTAKFEGMNVELLQIWSDEDLENLQGNMLGHLVMQRRLKLVPTLFIAVTDDEMEVISICNQSGEVILDTVGT
KKRKVLAESMAEFLEKLEPVVA
>Mature_181_residues
PLSVEQALANFSQRYVEAWKEKHDSLPINEELVGLASPCIDETRNLEVLWQPVARDESIRLVNIENGIELDLHDDFHAFY
GAQFSADMTAKFEGMNVELLQIWSDEDLENLQGNMLGHLVMQRRLKLVPTLFIAVTDDEMEVISICNQSGEVILDTVGTK
KRKVLAESMAEFLEKLEPVVA

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=175, Percent_Identity=46.8571428571429, Blast_Score=177, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_ALISL (B6EGG8)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262216.1
- GeneID:   6989059
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0699
- HOGENOM:   HBG298615
- OMA:   FANVEHA
- ProtClustDB:   PRK04968
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 20631; Mature: 20500

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSVEQALANFSQRYVEAWKEKHDSLPINEELVGLASPCIDETRNLEVLWQPVARDESI
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
RLVNIENGIELDLHDDFHAFYGAQFSADMTAKFEGMNVELLQIWSDEDLENLQGNMLGHL
EEEEECCCCEEEECCCHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHH
VMQRRLKLVPTLFIAVTDDEMEVISICNQSGEVILDTVGTKKRKVLAESMAEFLEKLEPV
HHHHHHHHCCEEEEEEECCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHC
VA
CC
>Mature Secondary Structure 
PLSVEQALANFSQRYVEAWKEKHDSLPINEELVGLASPCIDETRNLEVLWQPVARDESI
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCE
RLVNIENGIELDLHDDFHAFYGAQFSADMTAKFEGMNVELLQIWSDEDLENLQGNMLGHL
EEEEECCCCEEEECCCHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHH
VMQRRLKLVPTLFIAVTDDEMEVISICNQSGEVILDTVGTKKRKVLAESMAEFLEKLEPV
HHHHHHHHCCEEEEEEECCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHC
VA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA