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The map label for this gene is ygdK [H]

Identifier: 209694278

GI number: 209694278

Start: 774899

End: 775336

Strand: Reverse

Name: ygdK [H]

Synonym: VSAL_I0689

Alternate gene names: 209694278

Gene position: 775336-774899 (Counterclockwise)

Preceding gene: 209694279

Following gene: 209694274

Centisome position: 23.32

GC content: 39.95

Gene sequence:

>438_bases
ATGTCTACATTCCCTTCATCACCTTTTGGCTTTGACGTCACTCACACCACGGTATTGGATTTCATGAGTGAAGCGAAAGG
CTGGGAAGATCGTTATCGTAACGTGATTCAATTAGGTAAAAAACTGCCTAAAATGCCAGAAAAACTTCAACAAGAGACCG
TGACTATTTCTGGCTGTGAAAGCAAAGTGTGGTTACAACATGAAGTGGTCGATGGGGTTTATTTTTTCTGTGCTGATTCT
GATGCGCGTATTGTTCGAGGACTTATCGCATTAGTAATGGCTGCGGTTAATAATAAAACCGCAGAAGAGATTAGCGCATT
TGATATGGATGGATACTTTGCTCAATTAGGGTTAATTGAACATTTAAGCCCATCACGTGGTAATGGACTTAAAGCAATCA
TTGAAACCATTAATAAGGCCATTCGTTCAGATAGATAG

Upstream 100 bases:

>100_bases
ATTTGCCTTGTATAATACTAAGCAAGATGTTCAACGTTTTATCGACGCGCTAAATAAAGCCGCTGATATGCTATAAGCCC
AAGTTTAAGGTATTTTATTT

Downstream 100 bases:

>100_bases
AAACTATACGCTTCGCTAACTAGATACTATAAGAGCAGAAAATGCTGGTATTGATAGCAATACTTTCCACACCAGCCATA
CACGCACTTATAGTCTCTAG

Product: conserved hypothetical protein, SufE-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSTFPSSPFGFDVTHTTVLDFMSEAKGWEDRYRNVIQLGKKLPKMPEKLQQETVTISGCESKVWLQHEVVDGVYFFCADS
DARIVRGLIALVMAAVNNKTAEEISAFDMDGYFAQLGLIEHLSPSRGNGLKAIIETINKAIRSDR

Sequences:

>Translated_145_residues
MSTFPSSPFGFDVTHTTVLDFMSEAKGWEDRYRNVIQLGKKLPKMPEKLQQETVTISGCESKVWLQHEVVDGVYFFCADS
DARIVRGLIALVMAAVNNKTAEEISAFDMDGYFAQLGLIEHLSPSRGNGLKAIIETINKAIRSDR
>Mature_144_residues
STFPSSPFGFDVTHTTVLDFMSEAKGWEDRYRNVIQLGKKLPKMPEKLQQETVTISGCESKVWLQHEVVDGVYFFCADSD
ARIVRGLIALVMAAVNNKTAEEISAFDMDGYFAQLGLIEHLSPSRGNGLKAIIETINKAIRSDR

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=140, Percent_Identity=42.8571428571429, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1787969, Length=108, Percent_Identity=37.037037037037, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 16188; Mature: 16056

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFPSSPFGFDVTHTTVLDFMSEAKGWEDRYRNVIQLGKKLPKMPEKLQQETVTISGCE
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCC
SKVWLQHEVVDGVYFFCADSDARIVRGLIALVMAAVNNKTAEEISAFDMDGYFAQLGLIE
CHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHH
HLSPSRGNGLKAIIETINKAIRSDR
HCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STFPSSPFGFDVTHTTVLDFMSEAKGWEDRYRNVIQLGKKLPKMPEKLQQETVTISGCE
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCC
SKVWLQHEVVDGVYFFCADSDARIVRGLIALVMAAVNNKTAEEISAFDMDGYFAQLGLIE
CHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHH
HLSPSRGNGLKAIIETINKAIRSDR
HCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]