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The map label for this gene is ppdD [C]

Identifier: 209694261

GI number: 209694261

Start: 749726

End: 750157

Strand: Direct

Name: ppdD [C]

Synonym: VSAL_I0671

Alternate gene names: 209694261

Gene position: 749726-750157 (Clockwise)

Preceding gene: 209694256

Following gene: 209694266

Centisome position: 22.55

GC content: 33.8

Gene sequence:

>432_bases
ATGATTCTAATAAATAAATGTAACTTATCTCGTGTTCATATAAGGGGTATGACACTGATCGAAATTATGATCGTAATTGC
TATTATTGGTTTATTGTCAGCGATTGCTTATCCTGCGTATACAAACCATATATTAAAGGCGAACCGTATCGTTGCCTTAG
CTGATATGGCGAAAATTCAATTAGAATTAGAAACGAAATATATAACTAATTATTCAGATATAGCTAGCTCTATCGTTAGC
GGGGGAACTTGTTCTTTTTGTGAAACACAATCGGATAAATATACTCTGAGCTTAGAGGGGTTAACTGCTACAACTTATAC
GATTAAAGCTACTCCTATAAAGGCACAGATAAAGGATACATGCTCAGGGAAAACTTATACTGCGATTACTTTAAATCAAT
TTAATAAAAGTGAGCCTAAGGAATGCTGGTAA

Upstream 100 bases:

>100_bases
TCAAATCCTTTTGTAAACTATTGATAAAGCATCAATAATTCTTGCTTAAATTATACCAAGTATGAAAAATAGAAAGATAT
TTAGAGAAGGATAAATAGAA

Downstream 100 bases:

>100_bases
ACTAAAGGTGGGAATTTATACCCACCTTAATGTTTATCAACCAACGAAAGGCAACATACCACCAGCGGCAATAAAGAAGC
CAACCAAACCTACAATGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: Type IV Pilin; Tfp Pilus Assembly Protein PilE; Type IV Pilin PilE; Type IV Pilus Assembly Protein PilE; Pilus Assembly Protein; Type-IV Pilin; Prepilin-Type Cleavage/Methylation; Fimbrial Protein Pilin; General Secretion Pathway Protein H

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MILINKCNLSRVHIRGMTLIEIMIVIAIIGLLSAIAYPAYTNHILKANRIVALADMAKIQLELETKYITNYSDIASSIVS
GGTCSFCETQSDKYTLSLEGLTATTYTIKATPIKAQIKDTCSGKTYTAITLNQFNKSEPKECW

Sequences:

>Translated_143_residues
MILINKCNLSRVHIRGMTLIEIMIVIAIIGLLSAIAYPAYTNHILKANRIVALADMAKIQLELETKYITNYSDIASSIVS
GGTCSFCETQSDKYTLSLEGLTATTYTIKATPIKAQIKDTCSGKTYTAITLNQFNKSEPKECW
>Mature_143_residues
MILINKCNLSRVHIRGMTLIEIMIVIAIIGLLSAIAYPAYTNHILKANRIVALADMAKIQLELETKYITNYSDIASSIVS
GGTCSFCETQSDKYTLSLEGLTATTYTIKATPIKAQIKDTCSGKTYTAITLNQFNKSEPKECW

Specific function: Not Yet Known. [C]

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15774; Mature: 15774

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILINKCNLSRVHIRGMTLIEIMIVIAIIGLLSAIAYPAYTNHILKANRIVALADMAKIQ
CEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCEEEEEEEEEEE
LELETKYITNYSDIASSIVSGGTCSFCETQSDKYTLSLEGLTATTYTIKATPIKAQIKDT
EEEEEEEECCHHHHHHHHHCCCCCEEECCCCCEEEEEECCCEEEEEEEEECCEEEEECCC
CSGKTYTAITLNQFNKSEPKECW
CCCCEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MILINKCNLSRVHIRGMTLIEIMIVIAIIGLLSAIAYPAYTNHILKANRIVALADMAKIQ
CEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCEEEEEEEEEEE
LELETKYITNYSDIASSIVSGGTCSFCETQSDKYTLSLEGLTATTYTIKATPIKAQIKDT
EEEEEEEECCHHHHHHHHHCCCCCEEECCCCCEEEEEECCCEEEEEEEEECCEEEEECCC
CSGKTYTAITLNQFNKSEPKECW
CCCCEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA