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The map label for this gene is yfiO [C]

Identifier: 209694253

GI number: 209694253

Start: 735514

End: 736281

Strand: Reverse

Name: yfiO [C]

Synonym: VSAL_I0663

Alternate gene names: 209694253

Gene position: 736281-735514 (Counterclockwise)

Preceding gene: 209694257

Following gene: 209694252

Centisome position: 22.14

GC content: 39.19

Gene sequence:

>768_bases
ATGGATAACTTAAGTTTTTTTATTCAAGGATCATTTTCAAGCATGAAACGCTTAACACTTTCGTCATTATTAGCCGTATC
TTTGCTGGTTGGTTGCTCAAGCAGTGATGATGTTATCCCTGATATCCCACCATCAGAATTATATTCTCAGGCTCAAATAT
CGTTACAGGCCGGTAATTGGACAAGTGCGGTTGAACGCCTTGAAGCATTGGATTCTCGCTACCCTTTTGGTGCCTACTCA
GAGCAGGTTCAGCTCGATCTTATTTACGTATATTACAAAAATGATGACTTAGCTCTAGGTTTAGCCACCATTGAACGATT
TAATCGATTAAACCCAACAAACCCCAAAGCGGACTGGGTGCTATACATGAGAGGATTAACTCACATGGCTCAGGATAGAA
GCTTTATGCATGATCTATTTAGAGTTAATCGTTCAGATCGAGATCCTGAACCAGCACGTTCAGCCTTTAAAGATTTTAAA
CGCTTACTTGAGCGTTACCCTGATAGTTTATATGCAGAAGATGCTCAAACTCGTATGTTTGCGTTAAAAAATCGTTTAGC
CGATTACGAATTAGCTACCGCAGACTTTTATTTGCGTAGAGAAGCATGGATTTCAGCAATTAATCGTAGTCAAGAATTAC
AAAGAACCTACCCAGACACTGAGGCGGCAAGAAAATCATTAACGATTATGCTTTCTGCATATAAAGAGCTAAAGCTGGAT
GATGCAATTCAACGTACTGAAGAATTAATCGCATTAAACCCACAATAA

Upstream 100 bases:

>100_bases
AGTGGTACTAATACCAAACAAATACATCATATTTGGTATCATCAACACTATAAGTGAAATAAACTATCTACCATTGTATC
TGTTAACGGCACTTTTCGTA

Downstream 100 bases:

>100_bases
GCAATACGATAAAAACAAAAAAGCAGCGCTCAAACAAAGCGCTGCTTTTTTATATCAAAAGAATAGTGTTCTGTCTGTTC
TCGCTAACAAAGAAGGCGAG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MDNLSFFIQGSFSSMKRLTLSSLLAVSLLVGCSSSDDVIPDIPPSELYSQAQISLQAGNWTSAVERLEALDSRYPFGAYS
EQVQLDLIYVYYKNDDLALGLATIERFNRLNPTNPKADWVLYMRGLTHMAQDRSFMHDLFRVNRSDRDPEPARSAFKDFK
RLLERYPDSLYAEDAQTRMFALKNRLADYELATADFYLRREAWISAINRSQELQRTYPDTEAARKSLTIMLSAYKELKLD
DAIQRTEELIALNPQ

Sequences:

>Translated_255_residues
MDNLSFFIQGSFSSMKRLTLSSLLAVSLLVGCSSSDDVIPDIPPSELYSQAQISLQAGNWTSAVERLEALDSRYPFGAYS
EQVQLDLIYVYYKNDDLALGLATIERFNRLNPTNPKADWVLYMRGLTHMAQDRSFMHDLFRVNRSDRDPEPARSAFKDFK
RLLERYPDSLYAEDAQTRMFALKNRLADYELATADFYLRREAWISAINRSQELQRTYPDTEAARKSLTIMLSAYKELKLD
DAIQRTEELIALNPQ
>Mature_255_residues
MDNLSFFIQGSFSSMKRLTLSSLLAVSLLVGCSSSDDVIPDIPPSELYSQAQISLQAGNWTSAVERLEALDSRYPFGAYS
EQVQLDLIYVYYKNDDLALGLATIERFNRLNPTNPKADWVLYMRGLTHMAQDRSFMHDLFRVNRSDRDPEPARSAFKDFK
RLLERYPDSLYAEDAQTRMFALKNRLADYELATADFYLRREAWISAINRSQELQRTYPDTEAARKSLTIMLSAYKELKLD
DAIQRTEELIALNPQ

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=242, Percent_Identity=50.4132231404959, Blast_Score=261, Evalue=3e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29353; Mature: 29353

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLSFFIQGSFSSMKRLTLSSLLAVSLLVGCSSSDDVIPDIPPSELYSQAQISLQAGNW
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEECCCH
TSAVERLEALDSRYPFGAYSEQVQLDLIYVYYKNDDLALGLATIERFNRLNPTNPKADWV
HHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHH
LYMRGLTHMAQDRSFMHDLFRVNRSDRDPEPARSAFKDFKRLLERYPDSLYAEDAQTRMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ALKNRLADYELATADFYLRREAWISAINRSQELQRTYPDTEAARKSLTIMLSAYKELKLD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DAIQRTEELIALNPQ
HHHHHHHHHEECCCC
>Mature Secondary Structure
MDNLSFFIQGSFSSMKRLTLSSLLAVSLLVGCSSSDDVIPDIPPSELYSQAQISLQAGNW
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEECCCH
TSAVERLEALDSRYPFGAYSEQVQLDLIYVYYKNDDLALGLATIERFNRLNPTNPKADWV
HHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHH
LYMRGLTHMAQDRSFMHDLFRVNRSDRDPEPARSAFKDFKRLLERYPDSLYAEDAQTRMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ALKNRLADYELATADFYLRREAWISAINRSQELQRTYPDTEAARKSLTIMLSAYKELKLD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DAIQRTEELIALNPQ
HHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]