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The map label for this gene is yebA [C]

Identifier: 209694246

GI number: 209694246

Start: 727315

End: 728328

Strand: Reverse

Name: yebA [C]

Synonym: VSAL_I0655

Alternate gene names: 209694246

Gene position: 728328-727315 (Counterclockwise)

Preceding gene: 209694247

Following gene: 209694238

Centisome position: 21.9

GC content: 36.98

Gene sequence:

>1014_bases
ATGCCTGATAAAATCCGAATTTCAGTCTCTCATAACAAAGGTACGCGTTTTTTCGCTCTTTCTCCTAAACGGAAAAACAT
GGTGATTTTATCTTTGTTATTAGGGATAAGCTCTTTTGTGTTTACTTGTTTTGGTCTTCATTATTTCTACCAACAACAAC
AATTATCCAAACTAGCTATCACCCACTTGCAAGAGCAAAATAAGGGCCTAAATAAGCTAATTATTGACAATAACAGCAAT
AATCACGAGTTAACTCAGCAACTAGAAACTAAAGAAGATGAGCTTTTAGTAATAAGTCAGCGTATTGAAGATGTCGAATC
AGTTCTTGGATTACAAGAGTTATCTGAAGATGACTCGTTATTAGCAGAAAAAACACTTGAGCAACGATTAGATGTTGCCG
CGATAGACTCAGCAGTAAGAGCGACAATGTTTCGCCTTATTCCTAATGATACCCCTCTTAACTATACACGTGAATCATCC
AGTTTTGGACGAAGAACTAACCCTATTTCAGGAAAACGACAACGTCATTTAGGTCTAGATCTAACGTGTAAACGAGGAAC
AGAAATATACGCCCCAGCCGATGGTGTAATAGAACTCGCGCGTGGAAGTAACAAAGGTTATGGTAATTTATTAAAAGTTC
AGCATTCTTTTGGCTTTATGACCATGTACGCTCACCTGCAAAAATTTAAAGTACGATCAGGACAATTTGTAAAAAAAGGA
GACTTGATTGCAACTTGTGGTAATTCAGGAAATTCGACCGGCCCTCACTTACACTATGAAGTTCGTTTTCTAGGCAGAGT
ATTGAATCCTAGATCATTCATTGATTGGACGCCTGAGAAGTTTGATAGTTTGTTCGAAAAAGAACGTAGCGTGAAATGGA
CACCTTTAGTAAATGTCATTAGTAATGTGGTTAAACTGCAATTAAAGCTCACTCAAAAGCCGACAATAGAACAAGTTGAA
GCGATTAATACGGTAAAAGCGGAACAAAAAAATAATCAACAACTTACCCAATAA

Upstream 100 bases:

>100_bases
AAACGCCTGATCGAACTTAATGTGGGTAATGATGAACTATTATTGCGCCAATTATCAGAGCTAACCGAACCAAACTAACC
CAAAAGACAATTATTACTTT

Downstream 100 bases:

>100_bases
TATATTCTGCTAAAAAAGGTGAGTAGATACTCACCTTTTTTACTAAACTAGTTTCTTTCTCGATGTATCGAATCATTTGC
CTGTCGAAGTAAGCCTTTGC

Product: membrane associated metallopeptidases

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MPDKIRISVSHNKGTRFFALSPKRKNMVILSLLLGISSFVFTCFGLHYFYQQQQLSKLAITHLQEQNKGLNKLIIDNNSN
NHELTQQLETKEDELLVISQRIEDVESVLGLQELSEDDSLLAEKTLEQRLDVAAIDSAVRATMFRLIPNDTPLNYTRESS
SFGRRTNPISGKRQRHLGLDLTCKRGTEIYAPADGVIELARGSNKGYGNLLKVQHSFGFMTMYAHLQKFKVRSGQFVKKG
DLIATCGNSGNSTGPHLHYEVRFLGRVLNPRSFIDWTPEKFDSLFEKERSVKWTPLVNVISNVVKLQLKLTQKPTIEQVE
AINTVKAEQKNNQQLTQ

Sequences:

>Translated_337_residues
MPDKIRISVSHNKGTRFFALSPKRKNMVILSLLLGISSFVFTCFGLHYFYQQQQLSKLAITHLQEQNKGLNKLIIDNNSN
NHELTQQLETKEDELLVISQRIEDVESVLGLQELSEDDSLLAEKTLEQRLDVAAIDSAVRATMFRLIPNDTPLNYTRESS
SFGRRTNPISGKRQRHLGLDLTCKRGTEIYAPADGVIELARGSNKGYGNLLKVQHSFGFMTMYAHLQKFKVRSGQFVKKG
DLIATCGNSGNSTGPHLHYEVRFLGRVLNPRSFIDWTPEKFDSLFEKERSVKWTPLVNVISNVVKLQLKLTQKPTIEQVE
AINTVKAEQKNNQQLTQ
>Mature_336_residues
PDKIRISVSHNKGTRFFALSPKRKNMVILSLLLGISSFVFTCFGLHYFYQQQQLSKLAITHLQEQNKGLNKLIIDNNSNN
HELTQQLETKEDELLVISQRIEDVESVLGLQELSEDDSLLAEKTLEQRLDVAAIDSAVRATMFRLIPNDTPLNYTRESSS
FGRRTNPISGKRQRHLGLDLTCKRGTEIYAPADGVIELARGSNKGYGNLLKVQHSFGFMTMYAHLQKFKVRSGQFVKKGD
LIATCGNSGNSTGPHLHYEVRFLGRVLNPRSFIDWTPEKFDSLFEKERSVKWTPLVNVISNVVKLQLKLTQKPTIEQVEA
INTVKAEQKNNQQLTQ

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=115, Percent_Identity=43.4782608695652, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789099, Length=97, Percent_Identity=38.1443298969072, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=33.0357142857143, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082297, Length=100, Percent_Identity=36, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 38260; Mature: 38129

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKIRISVSHNKGTRFFALSPKRKNMVILSLLLGISSFVFTCFGLHYFYQQQQLSKLAI
CCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THLQEQNKGLNKLIIDNNSNNHELTQQLETKEDELLVISQRIEDVESVLGLQELSEDDSL
HHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHH
LAEKTLEQRLDVAAIDSAVRATMFRLIPNDTPLNYTRESSSFGRRTNPISGKRQRHLGLD
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCE
LTCKRGTEIYAPADGVIELARGSNKGYGNLLKVQHSFGFMTMYAHLQKFKVRSGQFVKKG
EEECCCCEEECCCCCHHEECCCCCCCCCCEEEEEHHCCHHHHHHHHHHHHHCCCCEEECC
DLIATCGNSGNSTGPHLHYEVRFLGRVLNPRSFIDWTPEKFDSLFEKERSVKWTPLVNVI
CEEEECCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
SNVVKLQLKLTQKPTIEQVEAINTVKAEQKNNQQLTQ
HHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PDKIRISVSHNKGTRFFALSPKRKNMVILSLLLGISSFVFTCFGLHYFYQQQQLSKLAI
CCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
THLQEQNKGLNKLIIDNNSNNHELTQQLETKEDELLVISQRIEDVESVLGLQELSEDDSL
HHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHH
LAEKTLEQRLDVAAIDSAVRATMFRLIPNDTPLNYTRESSSFGRRTNPISGKRQRHLGLD
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCE
LTCKRGTEIYAPADGVIELARGSNKGYGNLLKVQHSFGFMTMYAHLQKFKVRSGQFVKKG
EEECCCCEEECCCCCHHEECCCCCCCCCCEEEEEHHCCHHHHHHHHHHHHHCCCCEEECC
DLIATCGNSGNSTGPHLHYEVRFLGRVLNPRSFIDWTPEKFDSLFEKERSVKWTPLVNVI
CEEEECCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
SNVVKLQLKLTQKPTIEQVEAINTVKAEQKNNQQLTQ
HHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]