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The map label for this gene is ypjD [H]

Identifier: 209694238

GI number: 209694238

Start: 720268

End: 721062

Strand: Reverse

Name: ypjD [H]

Synonym: VSAL_I0647

Alternate gene names: 209694238

Gene position: 721062-720268 (Counterclockwise)

Preceding gene: 209694246

Following gene: 209694237

Centisome position: 21.68

GC content: 35.35

Gene sequence:

>795_bases
ATGGATATCATTACAGCAATCAGTGCTGCGCTTTTTTACTTTTTAGCATTAGGTTTTGTTATTCCTGGCTTAGCTAGTCA
AAATAAAATAAAAACCAATGCTGTATTTATATGTGCGTCGTTTGCATTACTTGTGCATGCGTGGCAATTAAAAGAACTCA
TTTTAAATACCTCAGGTCAGAATTTAAGTATTTTAAATGTAGCCTCTCTAATTAGCTTTATTATTTCACTCACGATGAGT
GTTTCAATGCTGAAATTTAGAGTATGGTTTATTCTGCCTGTTGTTTATAGTTTTTCAGCCATTAATTTACTTGCAGCAAC
CTTTCTCTCTGGTGCTTTTATTACCCATTTAGAAACGCACCCTAGCTTATTGATACATATATCATTAGCCTTATTTGCTT
ATTCAACCTTAATGATCGCCACTTTATATGCACTTCAGCTAGCTTGGCTTGATCATAAACTTCGCAGTAAAAAATCACTC
ACGCTAAATCCTAATCTTCCCCCTTTAATGATGGTGGAACGTCAACTTTTCAAGATCATCCTCGTTGGTTTATTTCTACT
GACTCTTACTTTATTGACCGGACTCACATTCATACAAGATATGCTTGCTCAAGGTAAAACTCATAAAGCGGTATTATCCT
TTATTGCTTGGGTTATCTATGCCGTATTAACATGGGGACATTATCAAAGAGGATGGAGAGGACAAAAAGCATTATGGTTT
AGCTTAACGGGTGCATTTCTTCTCACTCTTGCTTATTTTGGTAGTCGATTTGTGCAAGAAGTTATCTTAACGTAA

Upstream 100 bases:

>100_bases
GGTTATAATTAAAATTTTTTATCCTAACCGAATCACTCCTACCGAGATTGACCTGTACAGGGTATAATCAATCTGTTGAT
AAATTAGATGACTCGTGATT

Downstream 100 bases:

>100_bases
ACAAGACTTCTAGCTCACTTTTCAAGATCAAATTTGACATATCAAGCACTGATATTGATAAATAACCTTTACATTGTATT
TTTCACTGAGGATCAAGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDIITAISAALFYFLALGFVIPGLASQNKIKTNAVFICASFALLVHAWQLKELILNTSGQNLSILNVASLISFIISLTMS
VSMLKFRVWFILPVVYSFSAINLLAATFLSGAFITHLETHPSLLIHISLALFAYSTLMIATLYALQLAWLDHKLRSKKSL
TLNPNLPPLMMVERQLFKIILVGLFLLTLTLLTGLTFIQDMLAQGKTHKAVLSFIAWVIYAVLTWGHYQRGWRGQKALWF
SLTGAFLLTLAYFGSRFVQEVILT

Sequences:

>Translated_264_residues
MDIITAISAALFYFLALGFVIPGLASQNKIKTNAVFICASFALLVHAWQLKELILNTSGQNLSILNVASLISFIISLTMS
VSMLKFRVWFILPVVYSFSAINLLAATFLSGAFITHLETHPSLLIHISLALFAYSTLMIATLYALQLAWLDHKLRSKKSL
TLNPNLPPLMMVERQLFKIILVGLFLLTLTLLTGLTFIQDMLAQGKTHKAVLSFIAWVIYAVLTWGHYQRGWRGQKALWF
SLTGAFLLTLAYFGSRFVQEVILT
>Mature_264_residues
MDIITAISAALFYFLALGFVIPGLASQNKIKTNAVFICASFALLVHAWQLKELILNTSGQNLSILNVASLISFIISLTMS
VSMLKFRVWFILPVVYSFSAINLLAATFLSGAFITHLETHPSLLIHISLALFAYSTLMIATLYALQLAWLDHKLRSKKSL
TLNPNLPPLMMVERQLFKIILVGLFLLTLTLLTGLTFIQDMLAQGKTHKAVLSFIAWVIYAVLTWGHYQRGWRGQKALWF
SLTGAFLLTLAYFGSRFVQEVILT

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=259, Percent_Identity=49.034749034749, Blast_Score=237, Evalue=5e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29518; Mature: 29518

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIITAISAALFYFLALGFVIPGLASQNKIKTNAVFICASFALLVHAWQLKELILNTSGQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLSILNVASLISFIISLTMSVSMLKFRVWFILPVVYSFSAINLLAATFLSGAFITHLETH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PSLLIHISLALFAYSTLMIATLYALQLAWLDHKLRSKKSLTLNPNLPPLMMVERQLFKII
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
LVGLFLLTLTLLTGLTFIQDMLAQGKTHKAVLSFIAWVIYAVLTWGHYQRGWRGQKALWF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SLTGAFLLTLAYFGSRFVQEVILT
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]