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The map label for this gene is yjjV [H]

Identifier: 209694207

GI number: 209694207

Start: 676973

End: 677749

Strand: Direct

Name: yjjV [H]

Synonym: VSAL_I0615

Alternate gene names: 209694207

Gene position: 676973-677749 (Clockwise)

Preceding gene: 209694206

Following gene: 209694208

Centisome position: 20.36

GC content: 36.55

Gene sequence:

>777_bases
ATGACAACAAAACTGATTGATTCGCACTGTCATTTTGATTTTCCGCCTTTTAAAGACAATGAGCTTTTTTATTTAGAAAA
GGCACGCTCTGTTGGTGTGAAAAAACTGATCATTCCTAGTGTTAATTCAAGTAATTGGGAGACGGTAGAACGACTCTCTC
ATCAATATCCCGAACTTTATTATGCATTAGGTATTCACCCTCAATTTTTAACTGAGAACGATGAAGATGATGTGAAAAAG
TTAGAGGTATTATTGGCGAATAAGGCGAATAAATGCGTCGCTATTGGTGAGTGTGGATTGGATTTTTGGAATCAAGAGTA
CGATAAAAAACATCAAATGAATGTATTTAAAATGCAATGTAAGTTAGCTGTAAAGTACGAATTACCTTTGATTATCCACA
GCCGTAAAAGTCATGATGTGGTATTGAAAATATTACGAGAGATAAAACCATTGAAAGGTGGGGTGATCCACGGTTTTAGT
GGTAGTACGCAACAAGCCGAAGCATTTATTAAACTCGGTTTTTTCATCGGTGTAGGGGGAGTGATTAGTTATGATCGTTC
GATGAAAACAAAAAGAACAATTTCTGAGCTTCCTTTAGAGTGGTTGATGTTAGAAACTGACGCGCCAGATATGCCATTAT
CTGGATTTCAAGGCACGCCTAATACCCCTGATAAAGTCTCTAATATCCTAGAATGTTTAATTTTTATACGAAAAGAACCG
AGGGAAACGATTGCGAATGCTGTTTACAGAAATGCCAATCATTTGTTTGGGATTTGA

Upstream 100 bases:

>100_bases
AAGCTGTGGGTTAAAAAATATGACGCTTGGTGCCTCTCGTTAGGGTTAACTCCAGAAAATAAACGCAGTTGTGTGCCTTA
TAAAAAAGAAGAGATAAGCA

Downstream 100 bases:

>100_bases
GTTATTAGTCATTGCTTTAGATGTAATTGATGAATCTTTAGATATTCGTTAGTGATAAAGATCACACTAATGAATGAATG
AATGAATGAATGAATGAATG

Product: DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTTKLIDSHCHFDFPPFKDNELFYLEKARSVGVKKLIIPSVNSSNWETVERLSHQYPELYYALGIHPQFLTENDEDDVKK
LEVLLANKANKCVAIGECGLDFWNQEYDKKHQMNVFKMQCKLAVKYELPLIIHSRKSHDVVLKILREIKPLKGGVIHGFS
GSTQQAEAFIKLGFFIGVGGVISYDRSMKTKRTISELPLEWLMLETDAPDMPLSGFQGTPNTPDKVSNILECLIFIRKEP
RETIANAVYRNANHLFGI

Sequences:

>Translated_258_residues
MTTKLIDSHCHFDFPPFKDNELFYLEKARSVGVKKLIIPSVNSSNWETVERLSHQYPELYYALGIHPQFLTENDEDDVKK
LEVLLANKANKCVAIGECGLDFWNQEYDKKHQMNVFKMQCKLAVKYELPLIIHSRKSHDVVLKILREIKPLKGGVIHGFS
GSTQQAEAFIKLGFFIGVGGVISYDRSMKTKRTISELPLEWLMLETDAPDMPLSGFQGTPNTPDKVSNILECLIFIRKEP
RETIANAVYRNANHLFGI
>Mature_257_residues
TTKLIDSHCHFDFPPFKDNELFYLEKARSVGVKKLIIPSVNSSNWETVERLSHQYPELYYALGIHPQFLTENDEDDVKKL
EVLLANKANKCVAIGECGLDFWNQEYDKKHQMNVFKMQCKLAVKYELPLIIHSRKSHDVVLKILREIKPLKGGVIHGFSG
STQQAEAFIKLGFFIGVGGVISYDRSMKTKRTISELPLEWLMLETDAPDMPLSGFQGTPNTPDKVSNILECLIFIRKEPR
ETIANAVYRNANHLFGI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=264, Percent_Identity=30.6818181818182, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI225903439, Length=254, Percent_Identity=29.9212598425197, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI110349730, Length=263, Percent_Identity=29.6577946768061, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI226061853, Length=268, Percent_Identity=28.7313432835821, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=242, Percent_Identity=30.1652892561983, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI110349734, Length=263, Percent_Identity=30.0380228136882, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903424, Length=155, Percent_Identity=31.6129032258064, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=27.906976744186, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=44.1860465116279, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=28.2945736434109, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI48994985, Length=238, Percent_Identity=28.1512605042017, Blast_Score=103, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=213, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=28.735632183908, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=307, Percent_Identity=26.3843648208469, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648690, Length=263, Percent_Identity=30.4182509505703, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI221330018, Length=274, Percent_Identity=27.007299270073, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24586117, Length=274, Percent_Identity=27.007299270073, Blast_Score=91, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29472; Mature: 29341

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKLIDSHCHFDFPPFKDNELFYLEKARSVGVKKLIIPSVNSSNWETVERLSHQYPELY
CCCCEECCCCCCCCCCCCCCCEEEEECHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEE
YALGIHPQFLTENDEDDVKKLEVLLANKANKCVAIGECGLDFWNQEYDKKHQMNVFKMQC
EEECCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCHHEEEEE
KLAVKYELPLIIHSRKSHDVVLKILREIKPLKGGVIHGFSGSTQQAEAFIKLGFFIGVGG
EEEEEEECEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCC
VISYDRSMKTKRTISELPLEWLMLETDAPDMPLSGFQGTPNTPDKVSNILECLIFIRKEP
CEECCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
RETIANAVYRNANHLFGI
HHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
TTKLIDSHCHFDFPPFKDNELFYLEKARSVGVKKLIIPSVNSSNWETVERLSHQYPELY
CCCEECCCCCCCCCCCCCCCEEEEECHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEE
YALGIHPQFLTENDEDDVKKLEVLLANKANKCVAIGECGLDFWNQEYDKKHQMNVFKMQC
EEECCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCHHEEEEE
KLAVKYELPLIIHSRKSHDVVLKILREIKPLKGGVIHGFSGSTQQAEAFIKLGFFIGVGG
EEEEEEECEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCC
VISYDRSMKTKRTISELPLEWLMLETDAPDMPLSGFQGTPNTPDKVSNILECLIFIRKEP
CEECCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
RETIANAVYRNANHLFGI
HHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]