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The map label for this gene is yciR [C]

Identifier: 209694198

GI number: 209694198

Start: 670270

End: 672309

Strand: Reverse

Name: yciR [C]

Synonym: VSAL_I0606

Alternate gene names: 209694198

Gene position: 672309-670270 (Counterclockwise)

Preceding gene: 209694202

Following gene: 209694197

Centisome position: 20.22

GC content: 37.5

Gene sequence:

>2040_bases
ATGTCTCTTGCTCAAATACAACATTGGCTTCCTTTACTAACAGACAATAGCCCCTTCTTGTTTGCCATTCTGGATTCAGA
CCATAAATACGTTACGGTGAATAACCGATATAGTGAGATAAGTGGATTAAATCGAGAATCACTCTGTGGTCGAACTGATC
CTGAAATTTTAGGTGAGCATTTCTATTCTTCATTAAAATCCTACTATGACCGAGCATTCAATGGCGAAAAAATAGAAGCT
GAAATCACCTTAAATGATCATCGCTTTGAAACCAGTCTTCATTTTAGTTTATTTCCAATAGAGCAAGATGGTAATACTTA
TATTGTATTCCATGCTGTCGATACATCAGAACGACAGCTCTTACTTAATTCATTAGAAGAGAGTGAGTCAAAATATCGTA
AGTTAACCGAGCTTCTCACTGATGCGATTTTCTTATTAGAAGGCGACATCATCGTTTCTGCCAATACCGCATCAGCCACA
ATATTAGGGTTTAATAAACCATCAGAGTTTATTGGTGAAAGCATTGAACAATTATTCAGTTCACCATCAAAAACTAAATC
GTTATCTGAATTAATTACTGCTCTTCCTTCTGAGCAACAGCTCGTTGTTCGAAGCTCTGCTAATTGTGCAACTCGTGCTG
AATTGAGTTTAAGTGTAGAAAAGACGCATGTTCTTGGTAGTACCGCTCATCTGGTTATCCTTAAAAATAAAAAACCAACA
GAAAAAAATGTAACCATTTGCTCACCTCAAGTTGATCTTTTAACTGGGATTTATAACCGCCACGGTTTTACTCATGTTAT
TGAAAAAATGATCAAAGAAGACATTCCATTTTTCATGCTCTATCTTGATATTGATATTGATATTGATAATTTTAAAAACA
TTAATGACTCTTTAGGCCACCACATTGGTGATAGAGTACTAAAAGAGATATCGACTCGCTTACAAAAACTGCTACCAAAA
CATGCCGTAGTTGGGCATTTAGGCGGCGATGAATTTGGCATTATCTTTCCGAAACCAGAACACAATCAAATCCTTGACCA
ACTTGCTGAAAAGATCATTAACTTAATAAACCAACCATTTGATTTAGTACACTTTTCAAAACGATTAGCTTGCTCTATTG
GCAGTGTTCAATACCCTGTAGATGGAACAGATGCCCGCAGTTTGCTACAAAATGCAGATACTGCGATGTACGAAGCAAAA
GATCGTGGTCGTAATCGTTTGATCAAATTCCATGATCAAATGAATAAAGAAGCAAGAATGCGTCTATGGTTAGAAATCGA
ATTACAAAAAGCACTGCAAAATAATGGACTCGAAGTGTGGTACCAACCAAAAGTAAGTGCCCGTGATTTCAGAATTAATG
GTGCAGAAGCCCTCGTTCGTTGGAAACATCCGGTTGAAGGTTACATTAGCCCCGCTCGATTTATTCCTGTCGCAGAACGC
TCAGGTTTAATAGAAACTCTCGGCAAAGTGGTTATGCGTGAGGTTTTCCAAACGGTAAAAGAATGGGGTAACCAAGGTAT
TTTACCCGGTCGTATTGCTATCAATTTATCTCCAGCACAATTTGGTAATCCACAACTCATTGAGTATATGGAAAGATTAC
TAAAAACGACCCAAGTCGATCCTAATTGCATTACCTTGGAATTAACAGAAAGTGCCGTAATGAGTGATGGTGAACATGCG
ATTCAGATGCTCGATGCCATTAAAAAACTGGGATTTACACTGTCGATAGATGATTTTGGAACGGGCTATTCTTCCCTTGC
TTACTTAGCAAGATTCCCTGTCGATGAATTAAAAATCGACCGTGGTTTCATTAGTGAAATTGATACACTACCAAAACAAA
TTACCATTATTGAAAACGTGATTAATCTCGGAAAAAACTTAAATATGGATATTATTGCTGAGGGAGTAGAAACAAGACAA
CAAGCAATGCTACTGTCCAGTTTAAATTGTGATTCGATACAAGGCTTCCATTTCTATAAGCCTCAGCCAAAACAAGAGAT
TGAAGCGCTATTAGTACAGAACAAACGCGCATCATCCTAG

Upstream 100 bases:

>100_bases
GGGTTTCATTCAATGTATATTTTATCGTCCAAATTATTAATAGCTAAAATACCAATGAATCTGGTCGTAATTTGTCTTAT
TTACTAAAGCGGTAACCACT

Downstream 100 bases:

>100_bases
CAAATATCTCAACTTGATACCTAGAGAGAAACCACCACTTCCTAGGTATTACAGCCCCCTACTTCCAAGTTAAACAACAA
ATCACGACACTTAGTCCATT

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 678

Protein sequence:

>679_residues
MSLAQIQHWLPLLTDNSPFLFAILDSDHKYVTVNNRYSEISGLNRESLCGRTDPEILGEHFYSSLKSYYDRAFNGEKIEA
EITLNDHRFETSLHFSLFPIEQDGNTYIVFHAVDTSERQLLLNSLEESESKYRKLTELLTDAIFLLEGDIIVSANTASAT
ILGFNKPSEFIGESIEQLFSSPSKTKSLSELITALPSEQQLVVRSSANCATRAELSLSVEKTHVLGSTAHLVILKNKKPT
EKNVTICSPQVDLLTGIYNRHGFTHVIEKMIKEDIPFFMLYLDIDIDIDNFKNINDSLGHHIGDRVLKEISTRLQKLLPK
HAVVGHLGGDEFGIIFPKPEHNQILDQLAEKIINLINQPFDLVHFSKRLACSIGSVQYPVDGTDARSLLQNADTAMYEAK
DRGRNRLIKFHDQMNKEARMRLWLEIELQKALQNNGLEVWYQPKVSARDFRINGAEALVRWKHPVEGYISPARFIPVAER
SGLIETLGKVVMREVFQTVKEWGNQGILPGRIAINLSPAQFGNPQLIEYMERLLKTTQVDPNCITLELTESAVMSDGEHA
IQMLDAIKKLGFTLSIDDFGTGYSSLAYLARFPVDELKIDRGFISEIDTLPKQITIIENVINLGKNLNMDIIAEGVETRQ
QAMLLSSLNCDSIQGFHFYKPQPKQEIEALLVQNKRASS

Sequences:

>Translated_679_residues
MSLAQIQHWLPLLTDNSPFLFAILDSDHKYVTVNNRYSEISGLNRESLCGRTDPEILGEHFYSSLKSYYDRAFNGEKIEA
EITLNDHRFETSLHFSLFPIEQDGNTYIVFHAVDTSERQLLLNSLEESESKYRKLTELLTDAIFLLEGDIIVSANTASAT
ILGFNKPSEFIGESIEQLFSSPSKTKSLSELITALPSEQQLVVRSSANCATRAELSLSVEKTHVLGSTAHLVILKNKKPT
EKNVTICSPQVDLLTGIYNRHGFTHVIEKMIKEDIPFFMLYLDIDIDIDNFKNINDSLGHHIGDRVLKEISTRLQKLLPK
HAVVGHLGGDEFGIIFPKPEHNQILDQLAEKIINLINQPFDLVHFSKRLACSIGSVQYPVDGTDARSLLQNADTAMYEAK
DRGRNRLIKFHDQMNKEARMRLWLEIELQKALQNNGLEVWYQPKVSARDFRINGAEALVRWKHPVEGYISPARFIPVAER
SGLIETLGKVVMREVFQTVKEWGNQGILPGRIAINLSPAQFGNPQLIEYMERLLKTTQVDPNCITLELTESAVMSDGEHA
IQMLDAIKKLGFTLSIDDFGTGYSSLAYLARFPVDELKIDRGFISEIDTLPKQITIIENVINLGKNLNMDIIAEGVETRQ
QAMLLSSLNCDSIQGFHFYKPQPKQEIEALLVQNKRASS
>Mature_678_residues
SLAQIQHWLPLLTDNSPFLFAILDSDHKYVTVNNRYSEISGLNRESLCGRTDPEILGEHFYSSLKSYYDRAFNGEKIEAE
ITLNDHRFETSLHFSLFPIEQDGNTYIVFHAVDTSERQLLLNSLEESESKYRKLTELLTDAIFLLEGDIIVSANTASATI
LGFNKPSEFIGESIEQLFSSPSKTKSLSELITALPSEQQLVVRSSANCATRAELSLSVEKTHVLGSTAHLVILKNKKPTE
KNVTICSPQVDLLTGIYNRHGFTHVIEKMIKEDIPFFMLYLDIDIDIDNFKNINDSLGHHIGDRVLKEISTRLQKLLPKH
AVVGHLGGDEFGIIFPKPEHNQILDQLAEKIINLINQPFDLVHFSKRLACSIGSVQYPVDGTDARSLLQNADTAMYEAKD
RGRNRLIKFHDQMNKEARMRLWLEIELQKALQNNGLEVWYQPKVSARDFRINGAEALVRWKHPVEGYISPARFIPVAERS
GLIETLGKVVMREVFQTVKEWGNQGILPGRIAINLSPAQFGNPQLIEYMERLLKTTQVDPNCITLELTESAVMSDGEHAI
QMLDAIKKLGFTLSIDDFGTGYSSLAYLARFPVDELKIDRGFISEIDTLPKQITIIENVINLGKNLNMDIIAEGVETRQQ
AMLLSSLNCDSIQGFHFYKPQPKQEIEALLVQNKRASS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=419, Percent_Identity=35.0835322195704, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=31.5165876777251, Blast_Score=232, Evalue=7e-62,
Organism=Escherichia coli, GI226510982, Length=358, Percent_Identity=30.4469273743017, Blast_Score=170, Evalue=3e-43,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=37.8151260504202, Blast_Score=158, Evalue=9e-40,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=35.9832635983264, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=35.4166666666667, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=34.7280334728033, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=34.1666666666667, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1787055, Length=375, Percent_Identity=26.9333333333333, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=32.156862745098, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=31.8725099601594, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=208, Percent_Identity=30.2884615384615, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=31.6770186335404, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=30.2631578947368, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788381, Length=422, Percent_Identity=24.1706161137441, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI145693134, Length=296, Percent_Identity=27.7027027027027, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=32.7044025157233, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=32.3170731707317, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=29.0123456790123, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=29.6296296296296, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1789650, Length=425, Percent_Identity=18.8235294117647, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=32.9268292682927, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081881, Length=164, Percent_Identity=31.7073170731707, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=33.974358974359, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=31.547619047619, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 76686; Mature: 76554

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAQIQHWLPLLTDNSPFLFAILDSDHKYVTVNNRYSEISGLNRESLCGRTDPEILGEH
CCHHHHHHHHHEEECCCCEEEEEEECCCCEEEECCCHHHHCCCCHHHCCCCCCHHHHHHH
FYSSLKSYYDRAFNGEKIEAEITLNDHRFETSLHFSLFPIEQDGNTYIVFHAVDTSERQL
HHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEEEEEEEECCCCEEEEEEEECCCHHHH
LLNSLEESESKYRKLTELLTDAIFLLEGDIIVSANTASATILGFNKPSEFIGESIEQLFS
HHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCEEEEECCCCHHHHHHHHHHHHC
SPSKTKSLSELITALPSEQQLVVRSSANCATRAELSLSVEKTHVLGSTAHLVILKNKKPT
CCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEEHHEEECCCEEEEEEECCCCC
EKNVTICSPQVDLLTGIYNRHGFTHVIEKMIKEDIPFFMLYLDIDIDIDNFKNINDSLGH
CCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHH
HIGDRVLKEISTRLQKLLPKHAVVGHLGGDEFGIIFPKPEHNQILDQLAEKIINLINQPF
HHHHHHHHHHHHHHHHHCCHHHEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCH
DLVHFSKRLACSIGSVQYPVDGTDARSLLQNADTAMYEAKDRGRNRLIKFHDQMNKEARM
HHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCHHHHHHHHCCCHHEEHHHHHCCCCCCE
RLWLEIELQKALQNNGLEVWYQPKVSARDFRINGAEALVRWKHPVEGYISPARFIPVAER
EEEEEEEHHHHHHCCCCEEEECCCCCCCEEEECCHHHHEEECCCCCCCCCCHHEEECHHC
SGLIETLGKVVMREVFQTVKEWGNQGILPGRIAINLSPAQFGNPQLIEYMERLLKTTQVD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
PNCITLELTESAVMSDGEHAIQMLDAIKKLGFTLSIDDFGTGYSSLAYLARFPVDELKID
CCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHEEC
RGFISEIDTLPKQITIIENVINLGKNLNMDIIAEGVETRQQAMLLSSLNCDSIQGFHFYK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEECCC
PQPKQEIEALLVQNKRASS
CCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLAQIQHWLPLLTDNSPFLFAILDSDHKYVTVNNRYSEISGLNRESLCGRTDPEILGEH
CHHHHHHHHHEEECCCCEEEEEEECCCCEEEECCCHHHHCCCCHHHCCCCCCHHHHHHH
FYSSLKSYYDRAFNGEKIEAEITLNDHRFETSLHFSLFPIEQDGNTYIVFHAVDTSERQL
HHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEEEEEEEECCCCEEEEEEEECCCHHHH
LLNSLEESESKYRKLTELLTDAIFLLEGDIIVSANTASATILGFNKPSEFIGESIEQLFS
HHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCEEEEECCCCHHHHHHHHHHHHC
SPSKTKSLSELITALPSEQQLVVRSSANCATRAELSLSVEKTHVLGSTAHLVILKNKKPT
CCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEEHHEEECCCEEEEEEECCCCC
EKNVTICSPQVDLLTGIYNRHGFTHVIEKMIKEDIPFFMLYLDIDIDIDNFKNINDSLGH
CCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHHHH
HIGDRVLKEISTRLQKLLPKHAVVGHLGGDEFGIIFPKPEHNQILDQLAEKIINLINQPF
HHHHHHHHHHHHHHHHHCCHHHEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCH
DLVHFSKRLACSIGSVQYPVDGTDARSLLQNADTAMYEAKDRGRNRLIKFHDQMNKEARM
HHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCHHHHHHHHCCCHHEEHHHHHCCCCCCE
RLWLEIELQKALQNNGLEVWYQPKVSARDFRINGAEALVRWKHPVEGYISPARFIPVAER
EEEEEEEHHHHHHCCCCEEEECCCCCCCEEEECCHHHHEEECCCCCCCCCCHHEEECHHC
SGLIETLGKVVMREVFQTVKEWGNQGILPGRIAINLSPAQFGNPQLIEYMERLLKTTQVD
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
PNCITLELTESAVMSDGEHAIQMLDAIKKLGFTLSIDDFGTGYSSLAYLARFPVDELKID
CCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHEEC
RGFISEIDTLPKQITIIENVINLGKNLNMDIIAEGVETRQQAMLLSSLNCDSIQGFHFYK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEECCC
PQPKQEIEALLVQNKRASS
CCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]