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The map label for this gene is yhbU [H]

Identifier: 209694197

GI number: 209694197

Start: 669053

End: 670054

Strand: Reverse

Name: yhbU [H]

Synonym: VSAL_I0605

Alternate gene names: 209694197

Gene position: 670054-669053 (Counterclockwise)

Preceding gene: 209694198

Following gene: 209694196

Centisome position: 20.15

GC content: 41.42

Gene sequence:

>1002_bases
ATGGAACTCCTCTGCCCAGCTGGTAATTTACCTGCATTAAAAACCGCCATTGATTGTGGTGCTGATGCTGTTTATATCGG
CTTTAAAGACGATACAAACGCACGCCATTTTGCTGGTTTAAATTTCACAGGTAAAAAGCTTGAGAAAGCAGTGCAATATG
TTCACGATAATAATAAGCATATTCATGTCGCGCTAAATACTTTTGCGCACCCAGACGGCTTCAATCGCTGGACAAAAGCG
GTAGATAATGCAGCCGCAATGGGCATTGATGCACTTATCATTTCAGACATTGGTGTTTTAGAATATGCAGCTAATACTTA
CCCAGAATTAGAGCTGCATTTATCTGTTCAAGCCTCTGCAACAAACGTTGCTGCCATCGATTTCTATAAAAAGAATTTCA
ATATTAAACGCGTTGTCTTACCCCGCGTATTATCGATTCATCAAGTGAAGCAATTATCACGTAACTTAACCTCAGACGTA
GATCTTGAGGTTTTTGCTTTTGGTAGTTTATGCATAATGTCTGAAGGGCGTTGTTATCTCTCTTCTTATATGACCGGTGA
ATCACCAAATACCGTGGGTGCTTGCTCCCCTGCAAAATACGTTCGCTGGCAAGAAACAGAAAACGGATTAGAATCACGAT
TGAATAATATTCTGATCGATCGTTATGGTGAAGGTGAAAACGCAGGCTATCCAACGTTGTGTAAAGGCCGCTTTGATGTT
CAAGGAAAAACATTTCACGCATTAGAGGAGCCAACCAGTTTAAATACCCTATCTTTGGTTCCTGAGTTATTTTCAGCCAA
CGTCGCGTCAGTAAAAATTGAAGGTCGCCAACGCAGCCCTGCTTATGTTGAACAAGTAACTCGTACATGGCGTGCAGCTA
TTGATCGCTATAAAGCAAATCCTGAAGGTTATTCTGTTGAACCTCAATGGGATGCAACATTAGCGAATGTATCAGAAGGC
ACACAAACTACCCTTGGTGCTTACCATAAGAAATGGCAGTAG

Upstream 100 bases:

>100_bases
TATTTTAAGGACAAAACAACAAAAAACCTGCCTTACATCAAGTTCCTTATTTTTCTTATCTCTATCATAGAGCATCAGAT
TTTTGTAACTAGGTATTCTC

Downstream 100 bases:

>100_bases
GAGAAAATAATGAAATATGCACTTGGTCCACTGCTGTATTTTTGGTCTAAAGATAATATAGAACAATTTTATCAACAAGC
TTCAAATAGCCAAGCTGATA

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDNNKHIHVALNTFAHPDGFNRWTKA
VDNAAAMGIDALIISDIGVLEYAANTYPELELHLSVQASATNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDV
DLEVFAFGSLCIMSEGRCYLSSYMTGESPNTVGACSPAKYVRWQETENGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
QGKTFHALEEPTSLNTLSLVPELFSANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYKANPEGYSVEPQWDATLANVSEG
TQTTLGAYHKKWQ

Sequences:

>Translated_333_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDNNKHIHVALNTFAHPDGFNRWTKA
VDNAAAMGIDALIISDIGVLEYAANTYPELELHLSVQASATNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDV
DLEVFAFGSLCIMSEGRCYLSSYMTGESPNTVGACSPAKYVRWQETENGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
QGKTFHALEEPTSLNTLSLVPELFSANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYKANPEGYSVEPQWDATLANVSEG
TQTTLGAYHKKWQ
>Mature_333_residues
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDNNKHIHVALNTFAHPDGFNRWTKA
VDNAAAMGIDALIISDIGVLEYAANTYPELELHLSVQASATNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDV
DLEVFAFGSLCIMSEGRCYLSSYMTGESPNTVGACSPAKYVRWQETENGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
QGKTFHALEEPTSLNTLSLVPELFSANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYKANPEGYSVEPQWDATLANVSEG
TQTTLGAYHKKWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=333, Percent_Identity=71.4714714714715, Blast_Score=518, Evalue=1e-148,
Organism=Escherichia coli, GI1788397, Length=315, Percent_Identity=30.4761904761905, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI87081910, Length=295, Percent_Identity=31.5254237288136, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36842; Mature: 36842

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDNNKH
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCE
IHVALNTFAHPDGFNRWTKAVDNAAAMGIDALIISDIGVLEYAANTYPELELHLSVQASA
EEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHCCCCCEEEEEEEEECC
TNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDVDLEVFAFGSLCIMSEGRCYL
CEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEE
SSYMTGESPNTVGACSPAKYVRWQETENGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
EHHCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHEEEECCCCCCCCCCCCEECCEECC
QGKTFHALEEPTSLNTLSLVPELFSANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYKAN
CCCEEECCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
PEGYSVEPQWDATLANVSEGTQTTLGAYHKKWQ
CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFTGKKLEKAVQYVHDNNKH
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCE
IHVALNTFAHPDGFNRWTKAVDNAAAMGIDALIISDIGVLEYAANTYPELELHLSVQASA
EEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHCCCCCEEEEEEEEECC
TNVAAIDFYKKNFNIKRVVLPRVLSIHQVKQLSRNLTSDVDLEVFAFGSLCIMSEGRCYL
CEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCEEE
SSYMTGESPNTVGACSPAKYVRWQETENGLESRLNNILIDRYGEGENAGYPTLCKGRFDV
EHHCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHEEEECCCCCCCCCCCCEECCEECC
QGKTFHALEEPTSLNTLSLVPELFSANVASVKIEGRQRSPAYVEQVTRTWRAAIDRYKAN
CCCEEECCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
PEGYSVEPQWDATLANVSEGTQTTLGAYHKKWQ
CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]