Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694146
Identifier: 209694146
GI number: 209694146
Start: 605512
End: 605667
Strand: Reverse
Name: 209694146
Synonym: VSAL_I0553
Alternate gene names: NA
Gene position: 605667-605512 (Counterclockwise)
Preceding gene: 209694151
Following gene: 209694145
Centisome position: 18.21
GC content: 33.33
Gene sequence:
>156_bases TTGTCGCAAAGCCTAATAGTGACTGCAAACGTTTACTTAGCAAATAAAGTGCTTTTTTTCACGATTTTGACAGAAAACCT TGTTTCTGTAGATAAATCCAATTGCAGAACGCAAACGATTGGTTATGTCTTATATTTATTTTCTTACCCCAAATGA
Upstream 100 bases:
>100_bases GCCTGCTCCTGAGAATTCGAAGGACTATATATTTATTGAGCTAGTTAACTCTTGATTAGTTACCCATATTTATGGATTAA CTTAAATTTGCAGCGCCGTA
Downstream 100 bases:
>100_bases GTTGTAATTAATCAAATTTTCTCTATTATGGCCGTCTAGATGGAAGAACACCTACACTGTTAAACGTATAGACTTATATA TACTGTGGGTATTTTCTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 51; Mature: 50
Protein sequence:
>51_residues MSQSLIVTANVYLANKVLFFTILTENLVSVDKSNCRTQTIGYVLYLFSYPK
Sequences:
>Translated_51_residues MSQSLIVTANVYLANKVLFFTILTENLVSVDKSNCRTQTIGYVLYLFSYPK >Mature_50_residues SQSLIVTANVYLANKVLFFTILTENLVSVDKSNCRTQTIGYVLYLFSYPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 5808; Mature: 5677
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSLIVTANVYLANKVLFFTILTENLVSVDKSNCRTQTIGYVLYLFSYPK CCCCEEEEEEEEEHHHEEEEEEHHHHHHHCCCCCCCHHHHEEEEEEEECCC >Mature Secondary Structure SQSLIVTANVYLANKVLFFTILTENLVSVDKSNCRTQTIGYVLYLFSYPK CCCEEEEEEEEEHHHEEEEEEHHHHHHHCCCCCCCHHHHEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA